Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   Q7609_RS01365 Genome accession   NZ_CP131725
Coordinates   273350..275209 (-) Length   619 a.a.
NCBI ID   WP_005652279.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018S05-172     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 268350..280209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7609_RS01355 (Q7609_01355) lptD 269111..271459 (+) 2349 WP_342123325.1 LPS assembly protein LptD -
  Q7609_RS01360 (Q7609_01360) proS 271547..273265 (-) 1719 WP_005652281.1 proline--tRNA ligase -
  Q7609_RS01365 (Q7609_01365) recQ 273350..275209 (-) 1860 WP_005652279.1 DNA helicase RecQ Machinery gene
  Q7609_RS01370 (Q7609_01370) cyaY 275211..275516 (-) 306 WP_005652276.1 iron donor protein CyaY -
  Q7609_RS01375 (Q7609_01375) - 275614..275730 (+) 117 WP_005652274.1 lipoprotein -
  Q7609_RS01380 (Q7609_01380) lysA 275778..277025 (+) 1248 WP_005652271.1 diaminopimelate decarboxylase -
  Q7609_RS01385 (Q7609_01385) - 277232..277858 (+) 627 WP_005652269.1 response regulator -
  Q7609_RS01390 (Q7609_01390) - 277920..278360 (-) 441 WP_005648547.1 DUF2489 domain-containing protein -
  Q7609_RS01395 (Q7609_01395) yihI 278364..278924 (-) 561 WP_005648548.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 69981.44 Da        Isoelectric Point: 8.1655

>NTDB_id=792606 Q7609_RS01365 WP_005652279.1 273350..275209(-) (recQ) [Haemophilus influenzae strain 2018S05-172]
MLDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHD
FRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAVLRGMHNQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEPLELAMPRISAISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQPFMALIQEHKAILANAQNND

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=792606 Q7609_RS01365 WP_005652279.1 273350..275209(-) (recQ) [Haemophilus influenzae strain 2018S05-172]
ATGCTGGATTCTCCTTTACCATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTTGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTTATTAATGCTGCTTTAAATGGACAAGATGCGTTGGTGGTAATGGCAACGGGGA
ATGGCAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACTTTAGTGATTTCTCCGCTGATTTCCTTG
ATGAAGGATCAAGTGGATCAGCTGCAGGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGCACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCACATTGTATTTCTCAATGGGGGCATGAC
TTTCGCCCTGAATATACCCAGCTTGGCGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTATGCGACTCAACAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATACATTGGTAGTTTTGATCGAC
CAAATATTCGTTATACCTTGGAAGAAAAATACAAACCTATGGAGCAACTGACACGTTTTGTGTTGGCTCAAAAGGGTAAG
AGTGGGATTATTTATTGCAACAGCAGAAATAAGGTTGAGCGAATTGCGGAAAGTTTACGCAATAAAGGTGTCTCTGCTGC
TGCTTACCACGCAGGAATGGAAACGGCAATTCGTGAACGTGTGCAACAGGATTTTCAGCGTGATAATGTTCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGCTTTGTTGCCCATTTTGATTTACCACGTAGCATT
GAATCTTACTATCAAGAAACAGGTCGAGCAGGACGTGATGATTTGCCTGCCGAGGCGGTTTTGTTTTATGAACCAGCTGA
TTACGCTTGGTTACAAAAAATTCTCTTAGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAGCATAAATTAGAAGCTA
TTGGGGAATTTGCGGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGCGAGCATCGACAAACACCATGC
AATAACTGTGATATTTGCCTTGATCCTCCTAAAAAATATGATGGTTTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGACAATGTTTTGGTGCACATTATGTGATTGCGGTGTTGCGTGGCATGCACAATCAGAAAATTATTGAACGCC
AACACCATAAACTTTCAGTGTATGGCATTGGAAAAGATAAAAGTAAAGAGCATTGGCAGTCCGTCATTCGTCAGCTTATT
CATTTGGGTTTTGTGCAACAGGTTATTAGTGAATTAAATCCAACGTTGCAACTTACTGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAACCGTTAGAATTGGCAATGCCTCGTATTTCTGCAATCAGTAAAATTGCTCATAATCCACAACGTCAAGGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCTTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCG
TACATTGTCTTTAATGATGCGACGTTGCAAGAAATGGCACAATATATGCCAACAAGCAATATTGAAATGCTGCAAATTAA
TGGCGTGGGCTCTATCAAATTAGAGCGGTTTGGGCAGCCGTTTATGGCATTGATTCAAGAACATAAGGCAATTTTGGCGA
ATGCACAAAATAATGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(409-518)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

HRDC domain (HRDC)

(539-605)

DEAD/DEAH box helicase (DEAD)

(32-191)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

96.284

0.38