Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PVK35_RS02840 Genome accession   NZ_CP118442
Coordinates   394092..395531 (+) Length   479 a.a.
NCBI ID   WP_041211850.1    Uniprot ID   A0A2L0TRY9
Organism   Aeromonas caviae strain CYEY0630     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389092..400531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK35_RS02810 (PVK35_02810) mlaF 389670..390470 (-) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -
  PVK35_RS02815 (PVK35_02815) - 390677..391672 (+) 996 WP_274799046.1 KpsF/GutQ family sugar-phosphate isomerase -
  PVK35_RS02820 (PVK35_02820) kdsC 391672..392226 (+) 555 WP_042864828.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  PVK35_RS02825 (PVK35_02825) lptC 392223..392783 (+) 561 WP_039040473.1 LPS export ABC transporter periplasmic protein LptC -
  PVK35_RS02830 (PVK35_02830) lptA 392770..393288 (+) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  PVK35_RS02835 (PVK35_02835) lptB 393301..394026 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  PVK35_RS02840 (PVK35_02840) rpoN/rpoN1 394092..395531 (+) 1440 WP_041211850.1 RNA polymerase factor sigma-54 Machinery gene
  PVK35_RS02845 (PVK35_02845) hpf 395552..395839 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  PVK35_RS02850 (PVK35_02850) ptsN 395842..396288 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PVK35_RS02855 (PVK35_02855) rapZ 396329..397195 (+) 867 WP_010675869.1 RNase adapter RapZ -
  PVK35_RS02860 (PVK35_02860) npr 397216..397488 (+) 273 WP_201888080.1 PTS phosphocarrier protein NPr -
  PVK35_RS02865 (PVK35_02865) - 397504..399408 (-) 1905 WP_239054154.1 HTH domain-containing protein -
  PVK35_RS02870 (PVK35_02870) - 399512..400252 (-) 741 WP_113978331.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53731.54 Da        Isoelectric Point: 4.3728

>NTDB_id=792589 PVK35_RS02840 WP_041211850.1 394092..395531(+) (rpoN/rpoN1) [Aeromonas caviae strain CYEY0630]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQAETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=792589 PVK35_RS02840 WP_041211850.1 394092..395531(+) (rpoN/rpoN1) [Aeromonas caviae strain CYEY0630]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGGCAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGTGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAACGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATTGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0TRY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482