Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PVT70_RS21915 Genome accession   NZ_CP118440
Coordinates   4583885..4584514 (-) Length   209 a.a.
NCBI ID   WP_043001157.1    Uniprot ID   A0A3S7DAA7
Organism   Citrobacter amalonaticus strain DC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4578885..4589514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVT70_RS21900 (PVT70_21865) helD 4579126..4581180 (-) 2055 WP_061070309.1 DNA helicase IV -
  PVT70_RS21905 (PVT70_21870) - 4581304..4581762 (+) 459 WP_043001155.1 YccF domain-containing protein -
  PVT70_RS21910 (PVT70_21875) yccS 4581769..4583931 (+) 2163 WP_043001156.1 YccS family putative transporter -
  PVT70_RS21915 (PVT70_21880) sxy/tfoX 4583885..4584514 (-) 630 WP_043001157.1 TfoX/Sxy family DNA transformation protein Regulator
  PVT70_RS21920 (PVT70_21885) sulA 4584732..4585241 (+) 510 WP_043001158.1 SOS-induced cell division inhibitor SulA -
  PVT70_RS21925 (PVT70_21890) ompA 4585597..4586652 (+) 1056 WP_043001975.1 porin OmpA -
  PVT70_RS21930 (PVT70_21895) matP 4586729..4587181 (-) 453 WP_043001159.1 macrodomain Ter protein MatP -
  PVT70_RS21935 (PVT70_21900) - 4587367..4589127 (+) 1761 WP_043001160.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24229.11 Da        Isoelectric Point: 9.4514

>NTDB_id=792586 PVT70_RS21915 WP_043001157.1 4583885..4584514(-) (sxy/tfoX) [Citrobacter amalonaticus strain DC]
MKIHSYDRIYKSQEYLSSLGTIHFRSLFGSYSLTIRNTVFAMVANGELYLRACEQSVQYCVQHSPVWLTFLKRGRPVMLN
YYQVDDTLWRDQQQLIQLSKFSLDAALQEKLSRSSQQRLKDLPNMTFHLESLLNEAGIYDVATLRMLGAKMCWLRLRQMN
KSITDKVLFNLEGAIYGIHEAALPAIRRQELALWVKSLSPVPMSVEKSE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=792586 PVT70_RS21915 WP_043001157.1 4583885..4584514(-) (sxy/tfoX) [Citrobacter amalonaticus strain DC]
ATGAAAATTCACTCCTATGACAGGATCTATAAATCACAGGAATATTTATCTTCTCTGGGGACGATCCACTTCCGCTCACT
GTTTGGCAGTTACAGTCTGACAATCAGGAATACCGTCTTTGCGATGGTTGCCAATGGGGAGCTCTATCTGCGTGCCTGTG
AGCAAAGCGTACAGTATTGCGTGCAACATTCCCCGGTCTGGCTGACGTTTCTTAAACGCGGGCGTCCGGTCATGCTTAAT
TATTATCAGGTTGATGACACTCTTTGGCGCGACCAGCAACAGTTGATCCAGTTGTCGAAGTTTTCGCTGGATGCCGCGTT
GCAGGAGAAGTTGTCCCGCAGTTCTCAGCAGCGGCTTAAGGATCTCCCCAATATGACCTTTCATCTGGAGAGTTTGCTGA
ATGAAGCGGGGATCTACGACGTCGCCACCCTGCGAATGCTGGGCGCTAAAATGTGCTGGTTGCGACTGCGACAAATGAAC
AAATCCATCACTGACAAGGTGCTGTTTAATCTTGAAGGGGCTATTTATGGTATCCATGAAGCGGCGCTCCCGGCGATACG
CCGCCAGGAGCTTGCTCTGTGGGTTAAGTCGCTTTCACCGGTGCCGATGTCGGTGGAGAAGAGTGAGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S7DAA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

70.5

95.694

0.675