Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   PVE41_RS15370 Genome accession   NZ_CP118438
Coordinates   3232461..3233882 (-) Length   473 a.a.
NCBI ID   WP_072603076.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 1908-10     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3227461..3238882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS15340 (PVE41_15340) - 3227868..3228635 (+) 768 WP_011080632.1 phospholipase A -
  PVE41_RS15345 (PVE41_15345) - 3228874..3229278 (+) 405 WP_011080631.1 hypothetical protein -
  PVE41_RS15350 (PVE41_15350) - 3229352..3230455 (-) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  PVE41_RS15355 (PVE41_15355) - 3230658..3231050 (-) 393 WP_011150110.1 SulA-like leucine-rich domain-containing protein -
  PVE41_RS15360 (PVE41_15360) - 3231363..3232040 (-) 678 WP_282499913.1 LrgB family protein -
  PVE41_RS15365 (PVE41_15365) - 3232043..3232414 (-) 372 WP_011080627.1 CidA/LrgA family protein -
  PVE41_RS15370 (PVE41_15370) sbcB 3232461..3233882 (-) 1422 WP_072603076.1 exodeoxyribonuclease I Machinery gene
  PVE41_RS15375 (PVE41_15375) - 3233956..3234654 (-) 699 WP_282499914.1 oxidoreductase -
  PVE41_RS15380 (PVE41_15380) cobT 3235191..3236219 (+) 1029 WP_039553417.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  PVE41_RS15385 (PVE41_15385) - 3236221..3236988 (+) 768 WP_013571945.1 adenosylcobinamide-GDP ribazoletransferase -
  PVE41_RS15390 (PVE41_15390) cobU 3236991..3237551 (+) 561 WP_013571944.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  PVE41_RS15395 (PVE41_15395) cobC 3237561..3238199 (+) 639 WP_013571943.1 alpha-ribazole phosphatase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54727.96 Da        Isoelectric Point: 5.1722

>NTDB_id=792561 PVE41_RS15370 WP_072603076.1 3232461..3233882(-) (sbcB) [Vibrio vulnificus strain 1908-10]
MQQDNQPSFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=792561 PVE41_RS15370 WP_072603076.1 3232461..3233882(-) (sbcB) [Vibrio vulnificus strain 1908-10]
ATGCAGCAAGACAATCAGCCCTCTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATTGTGCCAATAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGACTTATTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCAGCCAAAACCCTCACTGCGGAGAACGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATCCGCCAGCATCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805