Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EsVE80_RS09925 Genome accession   NZ_AP022822
Coordinates   2088475..2090283 (-) Length   602 a.a.
NCBI ID   WP_173103566.1    Uniprot ID   A0A679IDQ5
Organism   Enterococcus saigonensis strain VE80     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2083475..2095283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EsVE80_RS09900 (EsVE80_19370) - 2084367..2085260 (-) 894 WP_173103562.1 RluA family pseudouridine synthase -
  EsVE80_RS09905 (EsVE80_19380) - 2085267..2086064 (-) 798 WP_173104187.1 NAD kinase -
  EsVE80_RS09910 (EsVE80_19390) - 2086071..2086739 (-) 669 WP_173103563.1 GTP pyrophosphokinase family protein -
  EsVE80_RS09915 (EsVE80_19400) - 2087105..2087686 (+) 582 WP_173103564.1 CYTH domain-containing protein -
  EsVE80_RS09920 (EsVE80_19410) - 2087768..2088424 (+) 657 WP_173103565.1 DsbA family protein -
  EsVE80_RS09925 (EsVE80_19420) pepF 2088475..2090283 (-) 1809 WP_173103566.1 oligoendopeptidase F Regulator
  EsVE80_RS09930 - 2090397..2091344 (-) 948 WP_173103567.1 competence protein CoiA -
  EsVE80_RS09935 (EsVE80_19430) - 2091421..2092074 (-) 654 WP_173103568.1 adaptor protein MecA -
  EsVE80_RS09940 (EsVE80_19440) spxA 2092273..2092671 (-) 399 WP_173103569.1 transcriptional regulator SpxA -
  EsVE80_RS09945 (EsVE80_19450) - 2093538..2094254 (+) 717 WP_173103570.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68721.24 Da        Isoelectric Point: 4.9732

>NTDB_id=79255 EsVE80_RS09925 WP_173103566.1 2088475..2090283(-) (pepF) [Enterococcus saigonensis strain VE80]
MATTQLPSRESLPEEMTWDLTPIFANDQAFDTAFAELKEELKQADKYKGTLANGSTAFLQALEFCLTVYRKIETLYVYSH
LKNDQDTGNTTYQGLYARASSLLAESSAAISWFEPEVLTLSDSQIWSYFEEEPKLAIYRHYVAQMVDNRAHILPADQEEL
LAGASEIFNAPDDIFSVLNNADLVFPVIEGSDGEKIQLSHGVYGQLMEATDRNVREAAFKGLYRIYGQFRNTFAQTLSSH
VKGHNFKAKVRKYSSAREASLSNNHIPESVYDTLVTVVNKHLPLLHRYVALRKKLLATDKLHMYDMYTPVLGEAPISYTY
EQAVKKAKEALQIMGPEYNEIVKEAFSSRWIDVIENKGKRSGAYSSGAYDTAPYILMNWHDTLDQLFTLVHEMGHSVHSY
FTRSNQPFVYGDYSIFLAEIASTTNENILTEYLLETEKDSKVRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHTADAKGTP
LTSEYLSDYYGDLNTKYYGPDVENDEEIKLEWARIPHFYYNYYVYQYATGFSAASALAKKILAKEDGALDHYLNYLKAGN
SDYPIEVMKKAGVDMTKADYIEDAMKMFEQRLSELETLVTTL

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=79255 EsVE80_RS09925 WP_173103566.1 2088475..2090283(-) (pepF) [Enterococcus saigonensis strain VE80]
ATGGCGACAACACAATTACCGAGCAGAGAGAGCTTGCCAGAAGAAATGACATGGGATTTAACACCAATTTTTGCTAATGA
TCAAGCTTTTGACACAGCCTTTGCTGAGTTGAAGGAAGAATTAAAACAAGCAGATAAATACAAAGGAACCTTAGCGAATG
GTTCGACAGCATTTTTACAAGCTTTGGAATTTTGTTTGACTGTTTATCGTAAAATAGAAACGTTATATGTTTATAGTCAC
TTGAAAAATGACCAAGATACAGGTAATACCACATATCAAGGGCTATATGCAAGAGCTAGTAGTTTATTAGCAGAAAGTAG
TGCAGCAATTTCTTGGTTTGAGCCAGAAGTTTTAACATTGTCTGATAGTCAGATTTGGTCTTATTTTGAAGAAGAGCCAA
AACTAGCAATTTATCGTCATTATGTTGCACAAATGGTCGATAACCGCGCCCATATTTTACCAGCAGACCAAGAAGAATTA
TTAGCCGGTGCAAGTGAGATTTTTAATGCGCCAGATGATATTTTTTCTGTGTTAAATAACGCTGATCTTGTTTTTCCGGT
AATTGAAGGCAGTGACGGTGAGAAAATTCAATTATCCCATGGTGTCTATGGTCAATTAATGGAGGCAACTGATCGTAATG
TACGAGAAGCTGCTTTTAAGGGATTGTATCGTATTTATGGTCAGTTTCGTAATACGTTTGCGCAAACATTAAGCTCACAC
GTCAAAGGACACAATTTTAAAGCAAAAGTAAGAAAGTATTCCTCAGCTAGAGAAGCATCTTTAAGTAATAATCATATTCC
TGAAAGTGTCTATGATACATTAGTAACAGTTGTTAATAAACATTTGCCGTTATTGCATCGCTATGTTGCTTTACGGAAAA
AATTACTTGCGACGGATAAATTGCATATGTACGATATGTATACGCCTGTTCTTGGTGAGGCACCGATTAGTTATACTTAT
GAACAAGCTGTAAAAAAAGCCAAAGAAGCGCTACAGATTATGGGACCGGAATACAATGAGATTGTCAAAGAAGCTTTTTC
AAGCCGATGGATTGATGTGATTGAAAATAAAGGCAAGCGCAGTGGGGCATATTCTTCTGGTGCTTACGATACAGCCCCAT
ACATTTTAATGAATTGGCATGACACTCTTGATCAATTGTTTACTTTAGTCCATGAAATGGGACACAGTGTTCATAGCTAT
TTTACGCGTAGTAATCAACCATTTGTTTACGGAGATTATTCCATCTTTTTAGCGGAAATTGCTTCTACAACGAATGAAAA
TATTTTAACAGAATATTTATTAGAAACAGAAAAAGATTCTAAAGTACGGGCTTACGTCTTGAATCACTATTTAGATGGTT
TCAAAGGAACAATTTTCCGTCAAACTCAATTTGCCGAGTTTGAGCATTTTATTCATACAGCAGATGCAAAAGGAACGCCT
TTAACTAGTGAGTATTTGAGTGATTACTATGGAGATTTGAATACCAAGTATTATGGACCAGATGTAGAAAATGATGAAGA
GATTAAATTGGAATGGGCGCGAATTCCGCATTTTTACTACAATTATTATGTTTATCAGTACGCGACTGGTTTTTCAGCAG
CCTCAGCTTTAGCTAAAAAAATACTGGCAAAAGAAGATGGTGCTCTAGATCACTATTTGAATTATTTAAAAGCTGGAAAT
AGTGATTATCCAATTGAAGTAATGAAAAAAGCTGGCGTGGACATGACTAAAGCAGATTATATCGAAGATGCTATGAAGAT
GTTTGAACAACGACTAAGCGAATTAGAAACGTTAGTAACGACATTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-185)

Peptidase family M3 (Peptidase_M3)

(206-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679IDQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.081

98.339

0.551

Multiple sequence alignment