Detailed information NTG0792532

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PVE41_RS06245
• Genome accession: NZ_CP118438
• Coordinates: 1293327..1294319 (-)
• Length: 330 a.a.
• NCBI ID: WP_011079521.1
• Uniprot ID: A0A3Q0L3U7
• Organism: Vibrio vulnificus strain 1908-10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1288327..1299319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PVE41_RS06225 (PVE41_06225)	recX	1288356..1288817 (-)	462	WP_045596852.1	recombination regulator RecX	-
PVE41_RS06230 (PVE41_06230)	recA	1288920..1289969 (-)	1050	WP_011079524.1	recombinase RecA	Machinery gene
PVE41_RS06235 (PVE41_06235)	pncC	1290103..1290606 (-)	504	WP_282500155.1	nicotinamide-nucleotide amidase	-
PVE41_RS06240 (PVE41_06240)	mutS	1290690..1293251 (+)	2562	WP_172571934.1	DNA mismatch repair protein MutS	-
PVE41_RS06245 (PVE41_06245)	rpoS	1293327..1294319 (-)	993	WP_011079521.1	RNA polymerase sigma factor RpoS	Regulator
PVE41_RS06250 (PVE41_06250)	-	1294400..1295296 (-)	897	WP_131070119.1	peptidoglycan DD-metalloendopeptidase family protein	-
PVE41_RS06255 (PVE41_06255)	-	1295340..1295966 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PVE41_RS06260 (PVE41_06260)	surE	1295969..1296736 (-)	768	WP_013571125.1	5'/3'-nucleotidase SurE	-
PVE41_RS06265 (PVE41_06265)	truD	1296742..1297785 (-)	1044	WP_013571124.1	tRNA pseudouridine(13) synthase TruD	-
PVE41_RS06270 (PVE41_06270)	ispF	1297821..1298297 (-)	477	WP_131069644.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PVE41_RS06275 (PVE41_06275)	ispD	1298294..1299007 (-)	714	WP_131069643.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PVE41_RS06280 (PVE41_06280)	ftsB	1299007..1299288 (-)	282	WP_011079514.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38054.13 Da
• Isoelectric Point: 4.5114

>NTDB_id=792532 PVE41_RS06245 WP_011079521.1 1293327..1294319(-) (rpoS) [Vibrio vulnificus strain 1908-10]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVKLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=792532 PVE41_RS06245 WP_011079521.1 1293327..1294319(-) (rpoS) [Vibrio vulnificus strain 1908-10]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCAAACTTCGCGAGGAGTTTGATGCCAGCAACAAGAGCTTAGACG
CGACGCAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTGGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGCTCTGTCGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCAGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAAGTTGGGCAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

3D structure

• AlphaFold DB: A0A3Q0L3U7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.899	100	0.836