Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PVE41_RS06125 Genome accession   NZ_CP118438
Coordinates   1271437..1271955 (-) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain 1908-10     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266437..1276955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS06100 (PVE41_06100) rimM 1266491..1267039 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  PVE41_RS06105 (PVE41_06105) rpsP 1267055..1267303 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  PVE41_RS06110 (PVE41_06110) ffh 1267599..1268975 (-) 1377 WP_011079540.1 signal recognition particle protein -
  PVE41_RS06115 (PVE41_06115) - 1269189..1269983 (+) 795 WP_011079539.1 inner membrane protein YpjD -
  PVE41_RS06120 (PVE41_06120) - 1270070..1271347 (+) 1278 WP_011079538.1 CNNM domain-containing protein -
  PVE41_RS06125 (PVE41_06125) luxS 1271437..1271955 (-) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  PVE41_RS06130 (PVE41_06130) - 1272006..1272611 (-) 606 WP_223370886.1 hypothetical protein -
  PVE41_RS06135 (PVE41_06135) gshA 1272649..1274214 (-) 1566 WP_045618628.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=792529 PVE41_RS06125 WP_011079537.1 1271437..1271955(-) (luxS) [Vibrio vulnificus strain 1908-10]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=792529 PVE41_RS06125 WP_011079537.1 1271437..1271955(-) (luxS) [Vibrio vulnificus strain 1908-10]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCAGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGCACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCACAAAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAATGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866