Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Q7611_RS02470 Genome accession   NZ_CP131723
Coordinates   481276..481929 (-) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018C08-260     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 476276..486929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7611_RS02470 (Q7611_02475) sxy/tfoX 481276..481929 (-) 654 WP_005692773.1 DNA transformation protein TfoX Regulator
  Q7611_RS02475 (Q7611_02480) recA 482303..483367 (+) 1065 WP_005651076.1 recombinase RecA Machinery gene
  Q7611_RS02480 (Q7611_02485) recX 483446..483904 (+) 459 WP_005651075.1 recombination regulator RecX -
  Q7611_RS02485 (Q7611_02490) crcB 483901..484287 (-) 387 WP_005651074.1 fluoride efflux transporter CrcB -
  Q7611_RS02490 (Q7611_02495) - 484287..485105 (-) 819 WP_005651073.1 Cof-type HAD-IIB family hydrolase -
  Q7611_RS02495 (Q7611_02500) - 485508..486512 (+) 1005 WP_005688262.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=792485 Q7611_RS02470 WP_005692773.1 481276..481929(-) (sxy/tfoX) [Haemophilus influenzae strain 2018C08-260]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=792485 Q7611_RS02470 WP_005692773.1 481276..481929(-) (sxy/tfoX) [Haemophilus influenzae strain 2018C08-260]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991