Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSR12_RS23120 Genome accession   NZ_CP118397
Coordinates   4540784..4542160 (-) Length   458 a.a.
NCBI ID   WP_004233577.1    Uniprot ID   A0A2X0Y605
Organism   Lysinibacillus sp. G01H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4535784..4547160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR12_RS23100 (PSR12_23100) ispF 4536832..4537308 (-) 477 WP_004233581.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PSR12_RS23105 (PSR12_23105) epsC 4537450..4538391 (-) 942 WP_004233580.1 serine O-acetyltransferase EpsC -
  PSR12_RS23110 (PSR12_23110) ispD 4538706..4539401 (-) 696 WP_274770962.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PSR12_RS23115 (PSR12_23115) - 4539413..4540498 (-) 1086 WP_274770964.1 PIN/TRAM domain-containing protein -
  PSR12_RS23120 (PSR12_23120) radA 4540784..4542160 (-) 1377 WP_004233577.1 DNA repair protein RadA Machinery gene
  PSR12_RS23125 (PSR12_23125) - 4542252..4544696 (-) 2445 WP_257520823.1 ATP-dependent Clp protease ATP-binding subunit -
  PSR12_RS23130 (PSR12_23130) - 4544686..4545795 (-) 1110 WP_131521806.1 protein arginine kinase -
  PSR12_RS23135 (PSR12_23135) - 4545792..4546334 (-) 543 WP_221682391.1 UvrB/UvrC motif-containing protein -
  PSR12_RS23140 (PSR12_23140) - 4546348..4546818 (-) 471 WP_004233573.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50187.01 Da        Isoelectric Point: 7.3825

>NTDB_id=792421 PSR12_RS23120 WP_004233577.1 4540784..4542160(-) (radA) [Lysinibacillus sp. G01H]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEMVAKGPRGAFQHSATVTQKAIPIIQVEATEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIDEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPSSNIGGWEFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=792421 PSR12_RS23120 WP_004233577.1 4540784..4542160(-) (radA) [Lysinibacillus sp. G01H]
TTGGCAAAGAAAAAAACGAAATTTGTATGTTCAGGCTGTGGCTATGAGTCTGCTAAATGGATGGGAAGATGCCCTGGGTG
TGGTGAATGGAATAAAATGGTGGAAGAAGTAGAGATGGTTGCAAAAGGTCCACGAGGAGCATTTCAACATTCTGCTACAG
TCACACAAAAGGCAATCCCGATTATCCAAGTGGAAGCTACTGAAGAATCGCGTGTAGCAACAGAAATGGGCGAACTCAAT
CGTGTATTAGGCGGGGGCATTGTACCTGGTTCTCTAGTATTGATCGGGGGCGATCCTGGAATAGGGAAATCAACATTACT
ATTACAGGTTTCCGCATTACTATCGAATAAAGGGCATCGCGTACTTTATATTTCTGGAGAGGAATCTATTCGTCAAACGA
AATTACGAGCAGAGCGTTTAGGAGTGATTTCTCAAGAGCTTTACATATACTCCGAAACAAACCTAGAGTTTTTAAACCAA
ACCATTGATGAAGTACAGCCTAAATTTGTTATTGTCGATTCCATACAAACGGTCTTTCATCCAGAAGTAACAAGCGCCCC
TGGTAGTGTCTCACAGGTTCGTGAATGTACAGCTGAGCTGATGCGAATCGCTAAAACCAAAGGCATTGCTATTTTTCTAG
TAGGGCATGTAACAAAAGAGGGACAAATTGCTGGGCCACGTATTTTAGAGCATATGGTGGATACTGTACTGTACTTTGAA
GGGGAAAGACATCATAATCATCGTATTTTACGAAGCCAAAAAAACCGCTTCGGATCTACAAATGAAATTGCTATATTTGA
AATGCTTCAAGGAGGGTTAAAGGAAGTTCTAAACCCTTCGGAGTTATTTTTACAGGAGCGTTCACAAGGTGCGGCGGGGT
CAACTATTGTAGCATCAATGGAGGGGACAAGGCCAATCCTTGTTGAAATTCAATCCTTAGTTACACCTACAAGCTTTAAC
TATCCTAAACGTATGGCCACAGGTGTCGATCAAAACCGAGTACAATTGCTAATGGCTGTACTAGAAAAGCGTATGGGTCT
CATGCTACAAGCTCAGGATGCATATATTAAAGTTGCTGGTGGTGTCAAGCTGGATGAGCCAGCAATAGATTTAGCAGTGT
TGACAAGCATTGTATCTAGTTTTAAGGATCAGGCAGTGCGTGCAACGGATTGTTTTATTGGTGAGGTCGGACTAACAGGT
GAGGTCCGTCGGGTATCACGTATAGAACAGCGGGTCATTGAAGCGGCGAAGCTTGGATTTAAAAGAGCCTTCATTCCTTC
TTCCAATATTGGTGGTTGGGAATTTCCGCAGGGAATTGAAATTGTTGGTGTAGAAACGATAAAAGATGCACTAAATGCAT
GCTTTAGAGAGTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0Y605

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.705

99.127

0.701
  radA Streptococcus pneumoniae Rx1

62.281

99.563

0.62
  radA Streptococcus pneumoniae D39

62.281

99.563

0.62
  radA Streptococcus pneumoniae R6

62.281

99.563

0.62
  radA Streptococcus pneumoniae TIGR4

62.281

99.563

0.62
  radA Streptococcus mitis NCTC 12261

62.281

99.563

0.62
  radA Streptococcus mitis SK321

62.281

99.563

0.62