Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PSR12_RS21645 Genome accession   NZ_CP118397
Coordinates   4261867..4262817 (-) Length   316 a.a.
NCBI ID   WP_004231947.1    Uniprot ID   -
Organism   Lysinibacillus sp. G01H     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4256867..4267817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR12_RS21615 (PSR12_21615) - 4256878..4257780 (-) 903 WP_221681461.1 polyprenyl synthetase family protein -
  PSR12_RS21620 (PSR12_21620) - 4258120..4258665 (+) 546 WP_221681462.1 hypothetical protein -
  PSR12_RS21625 (PSR12_21625) - 4258757..4259071 (-) 315 WP_221681464.1 antibiotic biosynthesis monooxygenase -
  PSR12_RS21630 (PSR12_21630) - 4259073..4260098 (-) 1026 WP_221681468.1 siderophore ABC transporter substrate-binding protein -
  PSR12_RS21635 (PSR12_21635) - 4260163..4260924 (-) 762 WP_221681470.1 ABC transporter ATP-binding protein -
  PSR12_RS21640 (PSR12_21640) - 4260921..4261874 (-) 954 WP_004231949.1 iron chelate uptake ABC transporter family permease subunit -
  PSR12_RS21645 (PSR12_21645) ceuB 4261867..4262817 (-) 951 WP_004231947.1 ABC transporter permease Machinery gene
  PSR12_RS21650 (PSR12_21650) - 4263102..4264154 (-) 1053 WP_274770485.1 hypothetical protein -
  PSR12_RS21655 (PSR12_21655) menC 4264205..4265311 (-) 1107 WP_274770487.1 o-succinylbenzoate synthase -
  PSR12_RS21660 (PSR12_21660) - 4265333..4266157 (-) 825 WP_221681483.1 GNAT family N-acetyltransferase -
  PSR12_RS21665 (PSR12_21665) - 4266157..4267302 (-) 1146 WP_221681484.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34796.00 Da        Isoelectric Point: 10.1980

>NTDB_id=792420 PSR12_RS21645 WP_004231947.1 4261867..4262817(-) (ceuB) [Lysinibacillus sp. G01H]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFQSEEARLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYVSVPILILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGI
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=792420 PSR12_RS21645 WP_004231947.1 4261867..4262817(-) (ceuB) [Lysinibacillus sp. G01H]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGCTGTCTATAGTGTCGCTCTTTATCGGAGTAGTAGATATTAAGCC
TAGCGACCTATTAGACTTCCAATCAGAAGAAGCTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCAATCTTGC
TGGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAATTCGTTTCACCAACAACAGCT
GGTACATTAGATGCCACACGGTTAGGTGTATTGATTTCCATGATGTTCTTTACGAACGTTACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTTATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATTTTGTCCTCTGTTACAACATTCTTTGCCTATAAGGCGAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTACGAACTGTTATACGTAAGTGTACC
AATACTCATTTTAGCTTACATTTACGCAAATCGTTTTACAGTAGCTGGGATGGGAGAGGATTTTGCAAAAAATCTTGGTC
TATCCTATAAATTTGTAGTCAATTTAGGCTTGGTGTTGGTAGCTCTTATCTCCACGACAGTGGTGTTAACAGTCGGTATC
ATTCCATTCCTTGGTTTGATTATTCCGAACATTATTTCCCTGTTTAAAGGTGATAATTTGGCAAAAACCTTGCCGCACAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGTGATATTTTAGGACGAGTACTGATATTCCCTTATGAAATACCAATAA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528