Detailed information NTG0079230

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: QMM27_RS10270
• Genome accession: NZ_AP025939
• Coordinates: 2017345..2018442 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266660.1
• Uniprot ID: Q97N44
• Organism: Streptococcus pneumoniae strain Utah_35B-24
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2012345..2023442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMM27_RS10245 (Utah35B_19870)	pgsA	2012866..2013411 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
QMM27_RS10250 (Utah35B_19880)	rodZ	2013422..2014243 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
QMM27_RS10255 (Utah35B_19890)	-	2014285..2015568 (-)	1284	WP_000170191.1	pitrilysin family protein	-
QMM27_RS10260 (Utah35B_19900)	-	2015565..2016815 (-)	1251	WP_000424276.1	pitrilysin family protein	-
QMM27_RS10265 (Utah35B_19910)	yaaA	2016974..2017342 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
QMM27_RS10270 (Utah35B_19920)	recF	2017345..2018442 (+)	1098	WP_000266660.1	DNA replication/repair protein RecF	Machinery gene
QMM27_RS10275 (Utah35B_19930)	guaB	2018492..2019970 (-)	1479	WP_000073400.1	IMP dehydrogenase	-
QMM27_RS10280 (Utah35B_19940)	trpS	2020122..2021147 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
QMM27_RS10285 (Utah35B_19950)	-	2021353..2022975 (+)	1623	WP_000958769.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41900.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=79230 QMM27_RS10270 WP_000266660.1 2017345..2018442(+) (recF) [Streptococcus pneumoniae strain Utah_35B-24]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=79230 QMM27_RS10270 WP_000266660.1 2017345..2018442(+) (recF) [Streptococcus pneumoniae strain Utah_35B-24]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q97N44

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46