Detailed information NTG0792298

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PVK52_RS20880
• Genome accession: NZ_CP118367
• Coordinates: 4408093..4408890 (+)
• Length: 265 a.a.
• NCBI ID: WP_015585126.1
• Uniprot ID: A0A855FAW5
• Organism: Raoultella ornithinolytica strain YZSHE171
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4403093..4413890

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PVK52_RS20845 (PVK52_20830)	gspH	4403246..4403731 (+)	486	WP_233471560.1	type II secretion system minor pseudopilin GspH	-
PVK52_RS20850 (PVK52_20835)	gspI	4403728..4404093 (+)	366	WP_004858044.1	type II secretion system minor pseudopilin GspI	-
PVK52_RS20855 (PVK52_20840)	gspJ	4404105..4404689 (+)	585	WP_088402371.1	type II secretion system minor pseudopilin GspJ	-
PVK52_RS20860 (PVK52_20845)	gspK	4404686..4405672 (+)	987	WP_088402372.1	type II secretion system minor pseudopilin GspK	-
PVK52_RS20865 (PVK52_20850)	gspL	4405659..4406861 (+)	1203	WP_004858036.1	type II secretion system protein GspL	-
PVK52_RS20870 (PVK52_20855)	gspM	4406854..4407348 (+)	495	WP_064357507.1	type II secretion system protein GspM	-
PVK52_RS20875 (PVK52_20860)	-	4407338..4408078 (+)	741	WP_104895497.1	type II secretion system protein N	-
PVK52_RS20880 (PVK52_20865)	pilD	4408093..4408890 (+)	798	WP_015585126.1	A24 family peptidase	Machinery gene
PVK52_RS20885 (PVK52_20870)	hrpB	4408911..4411340 (-)	2430	WP_015585127.1	ATP-dependent helicase HrpB	-
PVK52_RS20890 (PVK52_20875)	thpR	4411413..4411949 (+)	537	WP_004858022.1	RNA 2',3'-cyclic phosphodiesterase	-
PVK52_RS20895 (PVK52_20880)	sfsA	4411949..4412665 (+)	717	WP_004858020.1	DNA/RNA nuclease SfsA	-
PVK52_RS20900 (PVK52_20885)	dksA	4412830..4413285 (+)	456	WP_004858018.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29285.93 Da
• Isoelectric Point: 8.4762

>NTDB_id=792298 PVK52_RS20880 WP_015585126.1 4408093..4408890(+) (pilD) [Raoultella ornithinolytica strain YZSHE171]
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRARCCQAPISQRYPLTELASGLLFVLAGYLLTPGLPLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSGLFLWTQTL

Nucleotide

• Length: 798 bp

>NTDB_id=792298 PVK52_RS20880 WP_015585126.1 4408093..4408890(+) (pilD) [Raoultella ornithinolytica strain YZSHE171]
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCTTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCGCCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTATCCGCTGACGGAGCTGGCCAGCGGGCTGCTCTTTGTGTT
GGCCGGCTATCTGCTGACGCCGGGATTACCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
CCTGCTGACCGGCAAAGAGGCGCTAGGATACGGCGATTTTAAGCTGCTGGCGGCCCTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCGGCCTGTTTCTGTGGACTCAGACGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (122-230)

3D structure

• AlphaFold DB: A0A855FAW5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.529	100	0.498
pilD	Vibrio campbellii strain DS40M4	45.221	100	0.464
pilD	Neisseria gonorrhoeae MS11	46.614	94.717	0.442
pilD	Acinetobacter baumannii D1279779	45.276	95.849	0.434
pilD	Acinetobacter nosocomialis M2	44.186	97.358	0.43