Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   Q7614_RS01340 Genome accession   NZ_CP131719
Coordinates   271269..273128 (-) Length   619 a.a.
NCBI ID   WP_015701827.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016S09-327     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 266269..278128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7614_RS01330 (Q7614_01330) lptD 267030..269378 (+) 2349 WP_342121839.1 LPS assembly protein LptD -
  Q7614_RS01335 (Q7614_01335) proS 269466..271184 (-) 1719 WP_005648541.1 proline--tRNA ligase -
  Q7614_RS01340 (Q7614_01340) recQ 271269..273128 (-) 1860 WP_015701827.1 DNA helicase RecQ Machinery gene
  Q7614_RS01345 (Q7614_01345) cyaY 273130..273435 (-) 306 WP_005655473.1 iron donor protein CyaY -
  Q7614_RS01350 (Q7614_01350) - 273533..273649 (+) 117 WP_005652274.1 lipoprotein -
  Q7614_RS01355 (Q7614_01355) lysA 273697..274944 (+) 1248 WP_342144821.1 diaminopimelate decarboxylase -
  Q7614_RS01360 (Q7614_01360) - 275149..275775 (+) 627 WP_342144823.1 response regulator -
  Q7614_RS01365 (Q7614_01365) - 275837..276277 (-) 441 WP_005648547.1 DUF2489 domain-containing protein -
  Q7614_RS01370 (Q7614_01370) yihI 276281..276841 (-) 561 WP_005648548.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 70059.47 Da        Isoelectric Point: 8.0144

>NTDB_id=792283 Q7614_RS01340 WP_015701827.1 271269..273128(-) (recQ) [Haemophilus influenzae strain 2016S09-327]
MLDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHD
FRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAVLRGMHNQKIVERQHHKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEPLELAMPRISAISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQPFMALIQEHKAILANAQNND

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=792283 Q7614_RS01340 WP_015701827.1 271269..273128(-) (recQ) [Haemophilus influenzae strain 2016S09-327]
ATGCTGGATTCTCCTTTACCATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTCGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTTATTAATGCTGCTTTAAATGGACAAGATGCGTTGGTGGTAATGGCAACGGGGA
ATGGCAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACTTTAGTGATTTCTCCGCTGATTTCCTTG
ATGAAAGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGAACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCACATTGTATTTCTCAATGGGGGCATGAC
TTTCGCCCTGAATATACCCAGCTTGGCGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTATGCGACTCAACAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATACATTGGTAGTTTTGATCGAC
CAAATATTCGTTATACCTTGGAAGAAAAATACAAACCAATGGAACAACTGACACGTTTTGTGTTGGCTCAAAAGGGCAAA
AGTGGGATTATTTATTGCAACAGCAGAAATAAGGTTGAGCGAATTGCGGAAAGTTTACGCAATAAAGGTGTCTCTGCTGC
TGCTTACCACGCAGGAATGGAAACGGCAATTCGTGAACGTGTGCAACAGGATTTTCAGCGTGATAATGTTCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGCTTTGTTGCCCATTTTGATTTACCACGTAGCATT
GAATCTTACTATCAAGAAACAGGTCGAGCAGGACGTGATGATTTGCCTGCCGAGGCGGTTTTGTTTTATGAACCAGCTGA
TTACGCTTGGTTACAAAAAATTCTCTTCGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAACATAAATTAGAAGCTA
TTGGGGAATTTGCGGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGCGAGCATCGACAAACACCATGC
AATAACTGTGATATTTGCCTTGATCCTCCTAAAAAATATGATGGTTTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGGCAATGTTTTGGTGCACATTATGTGATTGCGGTGCTGCGTGGCATGCACAATCAGAAAATTGTTGAACGCC
AACACCATAAACTTTCAGTATATGGCATTGGAAAAGATAAAAGTAAAGAGCATTGGCAGTCTGTCATTCGTCAGCTTATT
CATTTGGGTTTTGTGCAACAGGTTATTAGTGAATTAAATCCAACGTTGCAACTTACTGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAACCGTTAGAATTGGCAATGCCTCGTATTTCTGCAATCAGTAAAATTGCTCATAATCCACAACGTCAAGGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCTTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCG
TACATTGTCTTTAATGATGCGACGTTGCAAGAAATGGCACAATATATGCCAACAAGCAATATTGAAATGTTGCAAATTAA
TGGCGTGGGCTCTATCAAATTAGAGCGGTTTGGGCAGCCGTTTATGGCATTGATTCAAGAACATAAGGCAATTTTGGCGA
ATGCGCAAAATAATGACTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(539-605)

RecQ zinc-binding (RecQ_Zn_bind)

(347-407)

DEAD/DEAH box helicase (DEAD)

(32-191)

RQC domain (RQC)

(409-518)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

96.284

0.38