Detailed information NTG0792229

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: PV008_RS16595
• Genome accession: NZ_CP118362
• Coordinates: 3462124..3463227 (+)
• Length: 367 a.a.
• NCBI ID: WP_023853086.1
• Uniprot ID: A0AAI9J0F0
• Organism: Bordetella pertussis strain SA28
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3457124..3468227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PV008_RS16570 (PV008_16590)	-	3459001..3459387 (+)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-
PV008_RS16575 (PV008_16595)	-	3459395..3460528 (-)	1134	WP_010931494.1	benzoate/H(+) symporter BenE family transporter	-
PV008_RS16580 (PV008_16600)	-	3460592..3460843 (-)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
PV008_RS16585 (PV008_16605)	coaD	3460898..3461407 (-)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
PV008_RS16590 (PV008_16610)	rsmD	3461428..3462048 (-)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
PV008_RS16595 (PV008_16615)	pilA	3462124..3463227 (+)	1104	WP_023853086.1	signal recognition particle-docking protein FtsY	Machinery gene
PV008_RS16600 (PV008_16620)	-	3463274..3464872 (-)	1599	Protein_3252	CYTH and CHAD domain-containing protein	-
PV008_RS16605 (PV008_16630)	phnE	3465057..3465878 (-)	822	WP_010931496.1	phosphonate ABC transporter, permease protein PhnE	-
PV008_RS16610 (PV008_16635)	phnE	3465875..3466744 (-)	870	WP_023998122.1	phosphonate ABC transporter, permease protein PhnE	-
PV008_RS16615 (PV008_16640)	-	3466762..3467247 (-)	486	Protein_3255	phosphonate ABC transporter ATP-binding protein	-
PV008_RS16620 (PV008_16645)	-	3467241..3468191 (-)	951	WP_005013747.1	IS481-like element IS481 family transposase	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 38499.02 Da
• Isoelectric Point: 6.5148

>NTDB_id=792229 PV008_RS16595 WP_023853086.1 3462124..3463227(+) (pilA) [Bordetella pertussis strain SA28]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSRTG
QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRA
QPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGR
ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTA
KGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1104 bp

>NTDB_id=792229 PV008_RS16595 WP_023853086.1 3462124..3463227(+) (pilA) [Bordetella pertussis strain SA28]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAGCCCGAGCCGCAGCCGCAACAACCGCCCGAGCCGCAGC
CACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGC
CAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGC
CGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGG
CGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCC
CAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCA
GCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCA
GCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGT
GCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAA
GATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGA
ACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCC
AAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGA
GGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (163-365)

• SRP54-type protein, helical bundle domain (SRP54_N) (83-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.913	94.005	0.507