Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PV008_RS13390 Genome accession   NZ_CP118362
Coordinates   2789376..2790737 (-) Length   453 a.a.
NCBI ID   WP_010930258.1    Uniprot ID   A0AAI9J212
Organism   Bordetella pertussis strain SA28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2784376..2795737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PV008_RS13365 (PV008_13390) - 2784599..2784865 (+) 267 WP_003818624.1 type B 50S ribosomal protein L31 -
  PV008_RS13370 (PV008_13395) - 2784981..2786717 (+) 1737 WP_010930261.1 glycosyltransferase family 39 protein -
  PV008_RS13375 (PV008_13400) - 2786714..2788120 (+) 1407 WP_010930260.1 MATE family efflux transporter -
  PV008_RS13380 (PV008_13405) - 2788194..2788421 (-) 228 WP_010930259.1 hypothetical protein -
  PV008_RS13385 (PV008_13410) - 2788580..2789353 (-) 774 WP_003818618.1 sulfite exporter TauE/SafE family protein -
  PV008_RS13390 (PV008_13415) radA 2789376..2790737 (-) 1362 WP_010930258.1 DNA repair protein RadA Machinery gene
  PV008_RS13395 (PV008_13420) - 2790902..2792578 (+) 1677 WP_019247748.1 VWA domain-containing protein -
  PV008_RS13400 (PV008_13425) - 2792656..2793234 (+) 579 WP_010926777.1 RNA polymerase sigma factor -
  PV008_RS13405 (PV008_13430) - 2793231..2794181 (-) 951 WP_005013747.1 IS481-like element IS481 family transposase -
  PV008_RS13410 (PV008_13435) - 2794287..2794979 (+) 693 WP_010930257.1 membrane protein -
  PV008_RS13415 (PV008_13440) - 2794993..2795709 (-) 717 WP_003810494.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47935.07 Da        Isoelectric Point: 7.1753

>NTDB_id=792227 PV008_RS13390 WP_010930258.1 2789376..2790737(-) (radA) [Bordetella pertussis strain SA28]
MAKSRTIYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAAPSAGGHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSATTKVLYVTGEESAEQVALRARRLGLQTGNVDLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSHAPN
PRRLTVGLEGNRLAMLLAVMHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPAGLVAFGEIGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=792227 PV008_RS13390 WP_010930258.1 2789376..2790737(-) (radA) [Bordetella pertussis strain SA28]
ATGGCGAAATCCCGAACCATCTATGTCTGCGCCGAATGCGGCGGCACCAGCCTCAAGTGGCAAGGCAAGTGCCCGCACTG
CTCGGCCTGGAATACCCTGGAAGAAACCGTGGAGTCCGCCGCGCCCTCGGCCGGCGGGCATCGCTACGCGCCCCTGGCGG
CAGCCAGCCCGGTGCGCAGCTTGTCCGAAATCGAAGCGCGCGAGACGCCGCGCCAGCCCACCGGACTGGACGAGTTCGAC
CGCGTGCTGGGCGGCGGGCTGGTCGCCGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCT
GCTGCAGGCGCTGGCCTCGCTGTCGGCCACGACCAAGGTGTTGTACGTCACCGGTGAAGAGTCGGCCGAACAGGTCGCGC
TGCGGGCGCGCCGGCTGGGCCTGCAGACCGGCAATGTCGACTTGCTGGCCGAGATCCGGCTCGAGGCGATCCAGGCGGCC
GTGTCCGAACAGAAGCCGACCGTGGCGGTGATCGATTCGATCCAGACGCTCTACAGCGGCGAGCTGACCGCCGCGCCGGG
CTCGGTGTCCCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGGCTGGCCAAGCAGACCGGCATCGCCATCGTGATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAACACATCGTCGACACGGTGCTGTACTTCGAGGGC
GACACGCATTCGTCGTTTCGCCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGCGTGTTCGCCAT
GACCGACCGCGGCCTGCGCGGCGTGGCCAATCCGTCCGCGCTGTTTCTCTCGCAGCACCAGCAGCAGGTGGCCGGTTCCT
GCGTGCTGGCGACCCAGGAAGGGACGCGCCCGCTGCTGGTGGAAGTGCAGGCGCTCGTCGATACTTCGCATGCGCCCAAT
CCGCGCCGCCTGACGGTGGGGCTGGAGGGTAATCGCCTGGCCATGCTGCTGGCCGTCATGCACCGCCATGCGGGCGTCTC
GACCTACGACCAGGACGTATTCGTCAATGCCGTGGGCGGGGTGCGCATCACCGAGCCGGCGGCCGACCTGCCGGTACTGC
TGGCCATCATGTCATCGCTGCGCGACAAGCCGCTGCCCGCCGGCCTGGTGGCGTTCGGCGAGATCGGCCTGGCCGGCGAG
ATCCGGCCCGCGCCGCGCGGCCAGGAGCGCCTGCGCGAAGCGGCCAAGCTGGGGTTCAGCGTTGCGCTGATTCCCAAGGC
CAATGCGCCGCGCCAGCCTATCGAAGGGCTGGAGATATGGGCCGTGGATCGGCTGGACGCCGCCCTGGACAAATTGCGTT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.492
  radA Streptococcus mitis NCTC 12261

46.07

100

0.466
  radA Streptococcus pneumoniae D39

48.26

95.143

0.459
  radA Streptococcus pneumoniae TIGR4

48.26

95.143

0.459
  radA Streptococcus mitis SK321

48.26

95.143

0.459
  radA Streptococcus pneumoniae R6

48.26

95.143

0.459
  radA Streptococcus pneumoniae Rx1

48.26

95.143

0.459