Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   Q7616_RS03100 Genome accession   NZ_CP131717
Coordinates   616669..617271 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain 2016N21-284     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 611669..622271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS03080 (Q7616_03085) - 612033..613703 (+) 1671 WP_116961917.1 fructose-specific PTS transporter subunit EIIC -
  Q7616_RS03090 (Q7616_03095) secG 614248..614589 (-) 342 WP_005669259.1 preprotein translocase subunit SecG -
  Q7616_RS03095 (Q7616_03100) - 614698..616653 (-) 1956 WP_116961918.1 DNA topoisomerase III -
  Q7616_RS03100 (Q7616_03105) recR 616669..617271 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  Q7616_RS03105 (Q7616_03110) - 617404..617733 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  Q7616_RS03110 (Q7616_03115) - 617892..618737 (-) 846 WP_005656472.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  Q7616_RS03115 (Q7616_03120) - 618810..621404 (-) 2595 WP_118806713.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=792166 Q7616_RS03100 WP_005626527.1 616669..617271(-) (recR) [Haemophilus influenzae strain 2016N21-284]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=792166 Q7616_RS03100 WP_005626527.1 616669..617271(-) (recR) [Haemophilus influenzae strain 2016N21-284]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCCATGTCTAAAA
TTGGCCATTGTTCACAATGTCGAGACTTTACGGAAGAAGATACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACAGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACTGTGGAAGGCGATGCAACAGCAAATTACATCGCTGAAATG
TGCCGCCAACACAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43