Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Q7616_RS02370 Genome accession   NZ_CP131717
Coordinates   467889..468542 (-) Length   217 a.a.
NCBI ID   WP_342120347.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N21-284     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 462889..473542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS02370 (Q7616_02375) sxy/tfoX 467889..468542 (-) 654 WP_342120347.1 DNA transformation protein TfoX Regulator
  Q7616_RS02375 (Q7616_02380) recA 468915..469979 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  Q7616_RS02380 (Q7616_02385) recX 470059..470517 (+) 459 WP_042594010.1 recombination regulator RecX -
  Q7616_RS02385 (Q7616_02390) crcB 470514..470900 (-) 387 WP_118818492.1 fluoride efflux transporter CrcB -
  Q7616_RS02390 (Q7616_02395) - 470900..471718 (-) 819 WP_110431550.1 Cof-type HAD-IIB family hydrolase -
  Q7616_RS02395 (Q7616_02400) - 472121..473125 (+) 1005 WP_005651072.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=792160 Q7616_RS02370 WP_342120347.1 467889..468542(-) (sxy/tfoX) [Haemophilus influenzae strain 2016N21-284]
MNIKDEHIESVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=792160 Q7616_RS02370 WP_342120347.1 467889..468542(-) (sxy/tfoX) [Haemophilus influenzae strain 2016N21-284]
ATGAATATAAAGGATGAGCATATAGAGAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.157

100

0.982