Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   Q7616_RS01480 Genome accession   NZ_CP131717
Coordinates   289743..291611 (-) Length   622 a.a.
NCBI ID   WP_342120278.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N21-284     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 284743..296611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS01470 (Q7616_01465) lptD 285504..287852 (+) 2349 WP_342120276.1 LPS assembly protein LptD -
  Q7616_RS01475 (Q7616_01470) proS 287940..289658 (-) 1719 WP_105894138.1 proline--tRNA ligase -
  Q7616_RS01480 (Q7616_01475) recQ 289743..291611 (-) 1869 WP_342120278.1 DNA helicase RecQ Machinery gene
  Q7616_RS01485 (Q7616_01480) cyaY 291613..291918 (-) 306 WP_005655473.1 iron donor protein CyaY -
  Q7616_RS01490 (Q7616_01485) - 292016..292132 (+) 117 WP_005652274.1 lipoprotein -
  Q7616_RS01495 (Q7616_01490) lysA 292180..293427 (+) 1248 WP_118806352.1 diaminopimelate decarboxylase -
  Q7616_RS01500 (Q7616_01495) - 293635..294261 (+) 627 WP_005652269.1 response regulator -
  Q7616_RS01505 (Q7616_01500) - 294323..294763 (-) 441 WP_118806351.1 DUF2489 domain-containing protein -
  Q7616_RS01510 (Q7616_01505) yihI 294767..295321 (-) 555 WP_118806350.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 70416.02 Da        Isoelectric Point: 8.3046

>NTDB_id=792153 Q7616_RS01480 WP_342120278.1 289743..291611(-) (recQ) [Haemophilus influenzae strain 2016N21-284]
MLDSPLLSKLSKIIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL
ISLMKDQVDQLQANGIEADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQW
GHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQ
KGKSGIIYCNSRNKVERIAESLRNKGVSAVAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLP
RSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQ
TPCNNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAVLRGMHNQKIIERQHHKLSVYGIGKDKSKEHWQSVIR
QLIHLGFVQQVISELNPTLQLTESAKVILKGEEPLELAMPRISAISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKEN
IPPYIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQPFMALIQEHKVILANAQNND

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=792153 Q7616_RS01480 WP_342120278.1 289743..291611(-) (recQ) [Haemophilus influenzae strain 2016N21-284]
ATGCTGGATTCTCCTTTACTATCAAAACTATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTT
CGGTTATCAATCTTTCCGTAAAGGGCAGGAAGAAGTTATTAATGCTGCTTTAAATGGACAAGATGCGTTGGTGGTAATGG
CAACGGGGAATGGCAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACTTTAGTGATTTCTCCGCTG
ATTTCCTTGATGAAAGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTT
AGCACAGCAGCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGA
CGAACAGTTTTTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCACATTGTATTTCTCAATGG
GGGCATGACTTTCGCCCTGAATATACCCAGCTTGGCGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTAC
GGCAACGGCAGATTATGCGACTCAACAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATACATTGGTAGTT
TTGATCGACCAAATATTCGTTATACCTTGGAAGAAAAATACAAACCTATGGAGCAACTGACACGTTTTGTGTTGGCTCAA
AAGGGTAAAAGTGGGATTATTTATTGCAACAGCAGAAATAAGGTTGAGCGAATTGCGGAAAGTTTACGCAATAAAGGTGT
CTCTGCTGTTGCTTACCATGCGGGAATGGAAACGGCAATTCGTGAACGTGTGCAACAGGATTTTCAGCGTGATAATGTTC
AAGTAGTAGTCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGCTTTGTTGCCCATTTTGATTTACCT
CGCAGCATTGAATCTTACTATCAAGAAACAGGTCGAGCAGGACGTGATGATTTGCCTGCCGAGGCGGTTTTGTTTTATGA
ACCAGCTGATTACGCTTGGTTACAAAAAATTCTCTTCGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAACATAAAT
TAGAAGCTATTGGGGAATTTGCGGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGCGAGCATCGACAA
ACACCATGCAATAACTGTGATATTTGCCTTGATCCTCCTAAAAAATATGATGGTTTAGTCGATGCGCAAAAAGTAATGTC
TACTATTTATCGAGTGGGACAATGTTTTGGTGCACATTATGTGATTGCGGTGCTGCGTGGCATGCACAATCAGAAAATTA
TTGAACGCCAACACCATAAACTTTCAGTGTATGGCATTGGAAAAGATAAAAGTAAAGAGCATTGGCAGTCCGTCATTCGT
CAGCTTATTCATTTGGGTTTTGTGCAACAGGTTATTAGTGAATTAAATCCAACGTTGCAACTTACTGAAAGTGCGAAAGT
GATTTTGAAAGGCGAAGAACCGTTAGAATTGGCAATGCCTCGTATTTCTGCAATCAGTAAAATTGCTCATAATCCACAAC
GTCAAGGTGTTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCTTACGCAAACAAATTGCCGATAAAGAAAAT
ATTCCGCCGTACATTGTCTTTAATGATGCGACGTTGCAAGAAATGGCACAATATATGCCAACAAGCAATATTGAAATGTT
GCAAATTAATGGCGTGGGCTCTATCAAGTTAGAGCGGTTTGGTCAGCCGTTTATGGCATTGATTCAAGAACATAAGGTAA
TTTTGGCGAATGCGCAAAATAATGACTAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(350-410)

RQC domain (RQC)

(412-521)

DEAD/DEAH box helicase (DEAD)

(35-194)

HRDC domain (HRDC)

(542-608)

Helicase conserved C-terminal domain (Helicase_C)

(231-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

95.82

0.378