Detailed information NTG0792138

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: PV001_RS16540
• Genome accession: NZ_CP118355
• Coordinates: 3456991..3458094 (+)
• Length: 367 a.a.
• NCBI ID: WP_023853086.1
• Uniprot ID: A0AAI9J0F0
• Organism: Bordetella pertussis strain SA21
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3451991..3463094

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PV001_RS16515 (PV001_16535)	-	3453868..3454254 (+)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-
PV001_RS16520 (PV001_16540)	-	3454262..3455395 (-)	1134	WP_010931494.1	benzoate/H(+) symporter BenE family transporter	-
PV001_RS16525 (PV001_16545)	-	3455459..3455710 (-)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
PV001_RS16530 (PV001_16550)	coaD	3455765..3456274 (-)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
PV001_RS16535 (PV001_16555)	rsmD	3456295..3456915 (-)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
PV001_RS16540 (PV001_16560)	pilA	3456991..3458094 (+)	1104	WP_023853086.1	signal recognition particle-docking protein FtsY	Machinery gene
PV001_RS16545 (PV001_16565)	-	3458141..3459739 (-)	1599	Protein_3245	CYTH and CHAD domain-containing protein	-
PV001_RS16550 (PV001_16575)	phnE	3459925..3460746 (-)	822	WP_010931496.1	phosphonate ABC transporter, permease protein PhnE	-
PV001_RS16555 (PV001_16580)	phnE	3460743..3461612 (-)	870	WP_023998122.1	phosphonate ABC transporter, permease protein PhnE	-
PV001_RS16560 (PV001_16585)	-	3461630..3462115 (-)	486	Protein_3248	phosphonate ABC transporter ATP-binding protein	-
PV001_RS16565 (PV001_16590)	-	3462109..3463059 (-)	951	WP_005013747.1	IS481-like element IS481 family transposase	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 38499.02 Da
• Isoelectric Point: 6.5148

>NTDB_id=792138 PV001_RS16540 WP_023853086.1 3456991..3458094(+) (pilA) [Bordetella pertussis strain SA21]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSRTG
QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRA
QPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGR
ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTA
KGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1104 bp

>NTDB_id=792138 PV001_RS16540 WP_023853086.1 3456991..3458094(+) (pilA) [Bordetella pertussis strain SA21]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAGCCCGAGCCGCAGCCGCAACAACCGCCCGAGCCGCAGC
CACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGC
CAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGC
CGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGG
CGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCC
CAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCA
GCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCA
GCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGT
GCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAA
GATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGA
ACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCC
AAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGA
GGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (163-365)

• SRP54-type protein, helical bundle domain (SRP54_N) (83-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.913	94.005	0.507