Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   Q7617_RS01345 Genome accession   NZ_CP131716
Coordinates   271247..273106 (-) Length   619 a.a.
NCBI ID   WP_015701827.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016C10-304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 266247..278106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7617_RS01335 (Q7617_01335) lptD 267008..269356 (+) 2349 WP_342121839.1 LPS assembly protein LptD -
  Q7617_RS01340 (Q7617_01340) proS 269444..271162 (-) 1719 WP_005648541.1 proline--tRNA ligase -
  Q7617_RS01345 (Q7617_01345) recQ 271247..273106 (-) 1860 WP_015701827.1 DNA helicase RecQ Machinery gene
  Q7617_RS01350 (Q7617_01350) cyaY 273108..273413 (-) 306 WP_005655473.1 iron donor protein CyaY -
  Q7617_RS01355 (Q7617_01355) - 273511..273627 (+) 117 WP_005652274.1 lipoprotein -
  Q7617_RS01360 (Q7617_01360) lysA 273675..274922 (+) 1248 WP_136428986.1 diaminopimelate decarboxylase -
  Q7617_RS01365 (Q7617_01365) - 275128..275754 (+) 627 WP_005652269.1 response regulator -
  Q7617_RS01370 (Q7617_01370) - 275816..276256 (-) 441 WP_005648547.1 DUF2489 domain-containing protein -
  Q7617_RS01375 (Q7617_01375) yihI 276260..276820 (-) 561 WP_005648548.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 70059.47 Da        Isoelectric Point: 8.0144

>NTDB_id=792089 Q7617_RS01345 WP_015701827.1 271247..273106(-) (recQ) [Haemophilus influenzae strain 2016C10-304]
MLDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHD
FRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAVLRGMHNQKIVERQHHKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEPLELAMPRISAISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQPFMALIQEHKAILANAQNND

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=792089 Q7617_RS01345 WP_015701827.1 271247..273106(-) (recQ) [Haemophilus influenzae strain 2016C10-304]
ATGCTGGATTCTCCTTTACCATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTCGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTTATTAATGCTGCTTTAAATGGACAAGATGCGTTGGTGGTAATGGCAACGGGGA
ATGGCAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACTTTAGTGATTTCTCCGCTGATTTCCTTG
ATGAAAGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGAACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCACATTGTATTTCTCAATGGGGGCATGAC
TTTCGCCCTGAATATACCCAGCTTGGCGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTATGCGACTCAACAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATACATTGGTAGTTTTGATCGAC
CAAATATTCGTTATACCTTGGAAGAAAAATACAAACCAATGGAACAACTGACACGTTTTGTGTTGGCTCAAAAGGGCAAA
AGTGGGATTATTTATTGCAACAGCAGAAATAAGGTTGAGCGAATTGCGGAAAGTTTACGCAATAAAGGTGTCTCTGCTGC
TGCTTACCACGCAGGAATGGAAACGGCAATTCGTGAACGTGTGCAACAGGATTTTCAGCGTGATAATGTTCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGCTTTGTTGCCCATTTTGATTTACCACGTAGCATT
GAATCTTACTATCAAGAAACAGGTCGAGCAGGACGTGATGATTTGCCTGCCGAGGCGGTTTTGTTTTATGAACCAGCTGA
TTACGCTTGGTTACAAAAAATTCTCTTCGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAACATAAATTAGAAGCTA
TTGGGGAATTTGCGGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGCGAGCATCGACAAACACCATGC
AATAACTGTGATATTTGCCTTGATCCTCCTAAAAAATATGATGGTTTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGGCAATGTTTTGGTGCACATTATGTGATTGCGGTGCTGCGTGGCATGCACAATCAGAAAATTGTTGAACGCC
AACACCATAAACTTTCAGTATATGGCATTGGAAAAGATAAAAGTAAAGAGCATTGGCAGTCTGTCATTCGTCAGCTTATT
CATTTGGGTTTTGTGCAACAGGTTATTAGTGAATTAAATCCAACGTTGCAACTTACTGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAACCGTTAGAATTGGCAATGCCTCGTATTTCTGCAATCAGTAAAATTGCTCATAATCCACAACGTCAAGGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCTTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCG
TACATTGTCTTTAATGATGCGACGTTGCAAGAAATGGCACAATATATGCCAACAAGCAATATTGAAATGTTGCAAATTAA
TGGCGTGGGCTCTATCAAATTAGAGCGGTTTGGGCAGCCGTTTATGGCATTGATTCAAGAACATAAGGCAATTTTGGCGA
ATGCGCAAAATAATGACTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(539-605)

RecQ zinc-binding (RecQ_Zn_bind)

(347-407)

DEAD/DEAH box helicase (DEAD)

(32-191)

RQC domain (RQC)

(409-518)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

96.284

0.38