Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QMM27_RS08230 Genome accession   NZ_AP025939
Coordinates   1643510..1644220 (+) Length   236 a.a.
NCBI ID   WP_000760675.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Utah_35B-24     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638510..1649220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM27_RS08215 (Utah35B_16340) - 1639051..1639299 (-) 249 WP_000364990.1 YneF family protein -
  QMM27_RS08220 (Utah35B_16350) treC 1639555..1641180 (-) 1626 WP_054363397.1 alpha,alpha-phosphotrehalase -
  QMM27_RS08225 (Utah35B_16360) treP 1641358..1643325 (-) 1968 WP_000514311.1 PTS system trehalose-specific EIIBC component -
  QMM27_RS08230 (Utah35B_16370) treR 1643510..1644220 (+) 711 WP_000760675.1 trehalose operon repressor Regulator
  QMM27_RS08235 - 1644375..1645709 (+) 1335 Protein_1639 ISL3 family transposase -
  QMM27_RS08240 (Utah35B_16400) - 1645784..1646710 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  QMM27_RS08245 (Utah35B_16410) amiE 1646721..1647788 (-) 1068 WP_000159564.1 ABC transporter ATP-binding protein Regulator
  QMM27_RS08250 (Utah35B_16420) amiD 1647797..1648723 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27621.80 Da        Isoelectric Point: 8.9698

>NTDB_id=79190 QMM27_RS08230 WP_000760675.1 1643510..1644220(+) (treR) [Streptococcus pneumoniae strain Utah_35B-24]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKEPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=79190 QMM27_RS08230 WP_000760675.1 1643510..1644220(+) (treR) [Streptococcus pneumoniae strain Utah_35B-24]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGAACCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.746

100

0.597