Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | JL003_RS05760 | Genome accession | NZ_AP022815 |
| Coordinates | 1178883..1179512 (+) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain JE86-ST05 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1158171..1196550 | 1178883..1179512 | within | 0 |
Gene organization within MGE regions
Location: 1158171..1196550
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL003_RS05670 (JE86ST05C_11060) | elfG | 1159552..1160622 (+) | 1071 | WP_001165655.1 | fimbrial protein | - |
| JL003_RS05675 (JE86ST05C_11070) | ycbU | 1160634..1161176 (+) | 543 | WP_000730614.1 | fimbrial protein | - |
| JL003_RS05680 (JE86ST05C_11080) | ycbV | 1161184..1161699 (+) | 516 | WP_096855666.1 | fimbrial protein | - |
| JL003_RS05685 (JE86ST05C_11090) | ycbF | 1161665..1162402 (+) | 738 | WP_001111459.1 | fimbrial chaperone | - |
| JL003_RS05690 (JE86ST05C_11100) | pyrD | 1162513..1163523 (+) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| JL003_RS05695 (JE86ST05C_11110) | zapC | 1163697..1164239 (+) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| JL003_RS05700 (JE86ST05C_11120) | ycbX | 1164236..1165345 (-) | 1110 | WP_000224273.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| JL003_RS05705 (JE86ST05C_11130) | rlmKL | 1165589..1167697 (+) | 2109 | WP_001086520.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| JL003_RS05710 (JE86ST05C_11140) | uup | 1167709..1169616 (+) | 1908 | WP_000053089.1 | ABC transporter ATP-binding protein | - |
| JL003_RS05715 (JE86ST05C_11150) | pqiA | 1169746..1170999 (+) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| JL003_RS05720 (JE86ST05C_11160) | pqiB | 1171004..1172644 (+) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| JL003_RS05725 (JE86ST05C_11170) | pqiC | 1172641..1173204 (+) | 564 | WP_000759123.1 | membrane integrity-associated transporter subunit PqiC | - |
| JL003_RS05730 (JE86ST05C_11180) | rmf | 1173460..1173627 (+) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| JL003_RS05735 (JE86ST05C_11190) | fabA | 1173697..1174215 (-) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| JL003_RS05740 (JE86ST05C_11200) | ycbZ | 1174284..1176044 (-) | 1761 | WP_000156526.1 | AAA family ATPase | - |
| JL003_RS05745 (JE86ST05C_11210) | matP | 1176230..1176682 (+) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| JL003_RS05750 (JE86ST05C_11220) | ompA | 1176758..1177798 (-) | 1041 | WP_000750416.1 | porin OmpA | - |
| JL003_RS05755 (JE86ST05C_11240) | sulA | 1178155..1178664 (-) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| JL003_RS05760 (JE86ST05C_11250) | sxy/tfoX | 1178883..1179512 (+) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| JL003_RS05765 (JE86ST05C_11260) | yccS | 1179475..1181637 (-) | 2163 | WP_000875044.1 | YccS family putative transporter | - |
| JL003_RS05770 (JE86ST05C_11270) | yccF | 1181647..1182093 (-) | 447 | WP_001261231.1 | YccF domain-containing protein | - |
| JL003_RS05775 (JE86ST05C_11280) | helD | 1182216..1184270 (+) | 2055 | WP_000420533.1 | DNA helicase IV | - |
| JL003_RS05780 (JE86ST05C_11290) | mgsA | 1184302..1184760 (-) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| JL003_RS05785 (JE86ST05C_11300) | csgI | 1184856..1185518 (-) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| JL003_RS05790 (JE86ST05C_11320) | yccU | 1185691..1186104 (+) | 414 | WP_000665217.1 | CoA-binding protein | - |
| JL003_RS05795 (JE86ST05C_11330) | hspQ | 1186149..1186466 (-) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| JL003_RS05800 (JE86ST05C_11340) | rlmI | 1186524..1187714 (-) | 1191 | WP_000116288.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| JL003_RS05805 (JE86ST05C_11350) | yccX | 1187809..1188087 (+) | 279 | WP_000048243.1 | acylphosphatase | - |
| JL003_RS05810 (JE86ST05C_11360) | tusE | 1188084..1188413 (-) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| JL003_RS05815 (JE86ST05C_11370) | yccA | 1188504..1189163 (-) | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| JL003_RS05820 (JE86ST05C_11380) | - | 1189571..1190590 (-) | 1020 | WP_001563016.1 | tyrosine-type recombinase/integrase | - |
| JL003_RS05825 (JE86ST05C_11390) | - | 1190568..1190810 (-) | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| JL003_RS05830 (JE86ST05C_11400) | - | 1190878..1193349 (-) | 2472 | WP_137473685.1 | exonuclease | - |
| JL003_RS05835 (JE86ST05C_11410) | - | 1193445..1193633 (-) | 189 | WP_000199480.1 | DUF1482 family protein | - |
| JL003_RS05840 (JE86ST05C_11420) | dicB | 1193630..1193818 (-) | 189 | WP_000449172.1 | cell division inhibition protein DicB | - |
| JL003_RS05845 (JE86ST05C_11430) | - | 1194442..1194672 (+) | 231 | WP_225380399.1 | hypothetical protein | - |
| JL003_RS05850 (JE86ST05C_11440) | - | 1194632..1195033 (-) | 402 | WP_001625307.1 | hypothetical protein | - |
| JL003_RS05855 (JE86ST05C_11450) | - | 1195045..1195197 (-) | 153 | WP_001345283.1 | DUF1391 family protein | - |
| JL003_RS05860 (JE86ST05C_11460) | - | 1195462..1195881 (-) | 420 | WP_000362153.1 | hypothetical protein | - |
| JL003_RS05865 (JE86ST05C_11470) | - | 1195982..1196263 (+) | 282 | WP_001625303.1 | transcriptional regulator | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=79186 JL003_RS05760 WP_000839153.1 1178883..1179512(+) (sxy/tfoX) [Escherichia coli strain JE86-ST05]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=79186 JL003_RS05760 WP_000839153.1 1178883..1179512(+) (sxy/tfoX) [Escherichia coli strain JE86-ST05]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |