Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   Q7619_RS00300 Genome accession   NZ_CP131714
Coordinates   50534..51304 (+) Length   256 a.a.
NCBI ID   WP_000616167.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2008C04-309     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45534..56304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7619_RS00280 (Q7619_00280) - 47229..47666 (+) 438 WP_000076479.1 CoA-binding protein -
  Q7619_RS00285 (Q7619_00285) - 47707..48180 (+) 474 WP_238097401.1 hypothetical protein -
  Q7619_RS00290 (Q7619_00290) - 48209..49219 (-) 1011 WP_000009158.1 YeiH family protein -
  Q7619_RS00295 (Q7619_00295) - 49368..50537 (+) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  Q7619_RS00300 (Q7619_00300) recO 50534..51304 (+) 771 WP_000616167.1 DNA repair protein RecO Machinery gene
  Q7619_RS00305 (Q7619_00305) plsX 51301..52293 (+) 993 WP_000717453.1 phosphate acyltransferase PlsX -
  Q7619_RS00310 (Q7619_00310) - 52299..52532 (+) 234 WP_000136447.1 acyl carrier protein -
  Q7619_RS00315 (Q7619_00315) - 52578..52868 (+) 291 Protein_55 transposase family protein -
  Q7619_RS00320 (Q7619_00320) blpU 53071..53301 (+) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  Q7619_RS00325 (Q7619_00325) - 53304..53429 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  Q7619_RS00330 (Q7619_00330) - 53838..54032 (+) 195 WP_000756776.1 hypothetical protein -
  Q7619_RS00335 (Q7619_00335) comR 54053..54946 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  Q7619_RS00340 (Q7619_00340) - 55489..55785 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.8959

>NTDB_id=791839 Q7619_RS00300 WP_000616167.1 50534..51304(+) (recO) [Streptococcus pneumoniae strain 2008C04-309]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQNLTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=791839 Q7619_RS00300 WP_000616167.1 50534..51304(+) (recO) [Streptococcus pneumoniae strain 2008C04-309]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAAATTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988