Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   Q7620_RS05825 Genome accession   NZ_CP131713
Coordinates   1161889..1162698 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain 2008C09-276     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156889..1167698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7620_RS05800 (Q7620_05790) - 1157812..1158798 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  Q7620_RS05805 (Q7620_05795) - 1159087..1159830 (-) 744 Protein_1147 ion channel -
  Q7620_RS05810 (Q7620_05800) - 1159877..1160131 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  Q7620_RS05815 (Q7620_05805) - 1160133..1160375 (-) 243 WP_000208080.1 DUF6290 family protein -
  Q7620_RS05820 (Q7620_05810) - 1160569..1161825 (+) 1257 WP_000530078.1 ISL3 family transposase -
  Q7620_RS05825 (Q7620_05815) vicX 1161889..1162698 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  Q7620_RS05830 (Q7620_05820) micB 1162700..1164049 (-) 1350 WP_061823223.1 cell wall metabolism sensor histidine kinase VicK Regulator
  Q7620_RS05835 (Q7620_05825) yycF 1164042..1164746 (-) 705 WP_000722076.1 response regulator YycF -
  Q7620_RS05840 (Q7620_05830) mutY 1164802..1165977 (-) 1176 WP_000886152.1 A/G-specific adenine glycosylase -
  Q7620_RS05845 (Q7620_05835) - 1166074..1166199 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=791766 Q7620_RS05825 WP_001289493.1 1161889..1162698(-) (vicX) [Streptococcus pneumoniae strain 2008C09-276]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=791766 Q7620_RS05825 WP_001289493.1 1161889..1162698(-) (vicX) [Streptococcus pneumoniae strain 2008C09-276]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773