Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | JLZ98_RS05555 | Genome accession | NZ_AP022811 |
| Coordinates | 1152055..1152684 (+) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain JE86-ST02 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1131343..1169643 | 1152055..1152684 | within | 0 |
Gene organization within MGE regions
Location: 1131343..1169643
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLZ98_RS05465 (JE86ST02C_10520) | elfG | 1132724..1133794 (+) | 1071 | WP_001165655.1 | fimbrial protein | - |
| JLZ98_RS05470 (JE86ST02C_10530) | ycbU | 1133806..1134348 (+) | 543 | WP_000730614.1 | fimbrial protein | - |
| JLZ98_RS05475 (JE86ST02C_10540) | ycbV | 1134356..1134871 (+) | 516 | WP_096855666.1 | fimbrial protein | - |
| JLZ98_RS05480 (JE86ST02C_10550) | ycbF | 1134837..1135574 (+) | 738 | WP_001111459.1 | fimbrial chaperone | - |
| JLZ98_RS05485 (JE86ST02C_10560) | pyrD | 1135685..1136695 (+) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| JLZ98_RS05490 (JE86ST02C_10570) | zapC | 1136869..1137411 (+) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| JLZ98_RS05495 (JE86ST02C_10580) | ycbX | 1137408..1138517 (-) | 1110 | WP_000224273.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| JLZ98_RS05500 (JE86ST02C_10590) | rlmKL | 1138761..1140869 (+) | 2109 | WP_001086520.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| JLZ98_RS05505 (JE86ST02C_10600) | uup | 1140881..1142788 (+) | 1908 | WP_000053089.1 | ABC transporter ATP-binding protein | - |
| JLZ98_RS05510 (JE86ST02C_10610) | pqiA | 1142918..1144171 (+) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| JLZ98_RS05515 (JE86ST02C_10620) | pqiB | 1144176..1145816 (+) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| JLZ98_RS05520 (JE86ST02C_10630) | pqiC | 1145813..1146376 (+) | 564 | WP_000759123.1 | membrane integrity-associated transporter subunit PqiC | - |
| JLZ98_RS05525 (JE86ST02C_10640) | rmf | 1146632..1146799 (+) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| JLZ98_RS05530 (JE86ST02C_10650) | fabA | 1146869..1147387 (-) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| JLZ98_RS05535 (JE86ST02C_10660) | ycbZ | 1147456..1149216 (-) | 1761 | WP_000156526.1 | Lon protease family protein | - |
| JLZ98_RS05540 (JE86ST02C_10670) | matP | 1149402..1149854 (+) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| JLZ98_RS05545 (JE86ST02C_10680) | ompA | 1149930..1150970 (-) | 1041 | WP_000750416.1 | porin OmpA | - |
| JLZ98_RS05550 (JE86ST02C_10700) | sulA | 1151327..1151836 (-) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| JLZ98_RS05555 (JE86ST02C_10710) | sxy/tfoX | 1152055..1152684 (+) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| JLZ98_RS05560 (JE86ST02C_10720) | yccS | 1152647..1154809 (-) | 2163 | WP_000875044.1 | YccS family putative transporter | - |
| JLZ98_RS05565 (JE86ST02C_10730) | yccF | 1154819..1155265 (-) | 447 | WP_001261231.1 | YccF domain-containing protein | - |
| JLZ98_RS05570 (JE86ST02C_10740) | helD | 1155388..1157442 (+) | 2055 | WP_000420533.1 | DNA helicase IV | - |
| JLZ98_RS05575 (JE86ST02C_10750) | mgsA | 1157474..1157932 (-) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| JLZ98_RS05580 (JE86ST02C_10760) | yccT | 1158028..1158690 (-) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| JLZ98_RS05585 (JE86ST02C_10780) | yccU | 1158863..1159276 (+) | 414 | WP_000665217.1 | CoA-binding protein | - |
| JLZ98_RS05590 (JE86ST02C_10790) | hspQ | 1159321..1159638 (-) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| JLZ98_RS05595 (JE86ST02C_10800) | rlmI | 1159696..1160886 (-) | 1191 | WP_000116288.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| JLZ98_RS05600 (JE86ST02C_10810) | yccX | 1160981..1161259 (+) | 279 | WP_000048243.1 | acylphosphatase | - |
| JLZ98_RS05605 (JE86ST02C_10820) | tusE | 1161256..1161585 (-) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| JLZ98_RS05610 (JE86ST02C_10830) | yccA | 1161676..1162335 (-) | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| JLZ98_RS05615 (JE86ST02C_10840) | - | 1162743..1163762 (-) | 1020 | WP_200984382.1 | tyrosine-type recombinase/integrase | - |
| JLZ98_RS05620 (JE86ST02C_10850) | - | 1163740..1163982 (-) | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| JLZ98_RS05625 (JE86ST02C_10860) | - | 1164050..1166521 (-) | 2472 | WP_200984383.1 | exonuclease | - |
| JLZ98_RS05630 (JE86ST02C_10870) | - | 1166617..1166805 (-) | 189 | WP_000199480.1 | DUF1482 family protein | - |
| JLZ98_RS05635 (JE86ST02C_10880) | dicB | 1166802..1166990 (-) | 189 | WP_000449172.1 | cell division inhibition protein DicB | - |
| JLZ98_RS05640 (JE86ST02C_10900) | ydfC | 1167556..1167774 (-) | 219 | WP_001171951.1 | protein YdfC | - |
| JLZ98_RS28095 (JE86ST02C_10910) | ydfB | 1167804..1167932 (-) | 129 | WP_000344964.1 | protein YdfB | - |
| JLZ98_RS05645 (JE86ST02C_10920) | - | 1167934..1168089 (-) | 156 | WP_000379589.1 | DUF1391 family protein | - |
| JLZ98_RS05650 (JE86ST02C_10930) | - | 1168362..1169078 (-) | 717 | WP_000103687.1 | S24 family peptidase | - |
| JLZ98_RS05655 (JE86ST02C_10940) | - | 1169128..1169343 (+) | 216 | WP_000471549.1 | Cro/CI family transcriptional regulator | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=79164 JLZ98_RS05555 WP_000839153.1 1152055..1152684(+) (sxy/tfoX) [Escherichia coli strain JE86-ST02]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=79164 JLZ98_RS05555 WP_000839153.1 1152055..1152684(+) (sxy/tfoX) [Escherichia coli strain JE86-ST02]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |