Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   PVK55_RS00340 Genome accession   NZ_CP118309
Coordinates   53976..54071 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20192362     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 48976..59071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK55_RS00325 (PVK55_00320) - 49847..51187 (+) 1341 WP_002987721.1 hypothetical protein -
  PVK55_RS00330 (PVK55_00325) purB 51556..52848 (+) 1293 WP_002987723.1 adenylosuccinate lyase -
  PVK55_RS00335 (PVK55_00330) comR 52981..53892 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  PVK55_RS00340 comS 53976..54071 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  PVK55_RS00345 (PVK55_00335) ruvB 54118..55116 (+) 999 WP_002987726.1 Holliday junction branch migration DNA helicase RuvB -
  PVK55_RS00350 (PVK55_00340) - 55254..55691 (+) 438 WP_002987727.1 low molecular weight protein-tyrosine-phosphatase -
  PVK55_RS00355 (PVK55_00345) - 55715..56116 (+) 402 WP_002987730.1 MORN repeat-containing protein -
  PVK55_RS00360 (PVK55_00350) - 56113..57888 (+) 1776 WP_002987732.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=791608 PVK55_RS00340 WP_198462994.1 53976..54071(+) (comS) [Streptococcus pyogenes strain 20192362]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=791608 PVK55_RS00340 WP_198462994.1 53976..54071(+) (comS) [Streptococcus pyogenes strain 20192362]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452