Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   Q7622_RS07440 Genome accession   NZ_CP131711
Coordinates   1470132..1471799 (-) Length   555 a.a.
NCBI ID   WP_000923573.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2014C08-275     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1465132..1476799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7622_RS07405 (Q7622_07385) - 1465278..1465775 (-) 498 Protein_1465 aldose 1-epimerase family protein -
  Q7622_RS07410 (Q7622_07390) - 1465791..1466447 (-) 657 Protein_1466 IS5 family transposase -
  Q7622_RS07415 (Q7622_07395) - 1466430..1466573 (-) 144 Protein_1467 PTS fructose transporter subunit IIB -
  Q7622_RS07420 (Q7622_07400) - 1466611..1467087 (-) 477 WP_000242188.1 PTS sugar transporter subunit IIA -
  Q7622_RS07425 (Q7622_07405) - 1467267..1467419 (+) 153 WP_000693359.1 hypothetical protein -
  Q7622_RS07430 (Q7622_07410) lepA 1467500..1469323 (-) 1824 WP_001047216.1 translation elongation factor 4 -
  Q7622_RS07435 (Q7622_07415) - 1469402..1470130 (-) 729 WP_000133310.1 metallophosphoesterase family protein -
  Q7622_RS07440 (Q7622_07420) recN 1470132..1471799 (-) 1668 WP_000923573.1 DNA repair protein RecN Machinery gene
  Q7622_RS07445 (Q7622_07425) - 1471806..1472237 (-) 432 WP_001034415.1 arginine repressor -
  Q7622_RS07450 (Q7622_07430) - 1472230..1473045 (-) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  Q7622_RS07455 (Q7622_07435) - 1473038..1473913 (-) 876 WP_000743819.1 polyprenyl synthetase family protein -
  Q7622_RS07460 (Q7622_07440) - 1473910..1474122 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  Q7622_RS07465 (Q7622_07445) xseA 1474100..1475440 (-) 1341 WP_000417447.1 exodeoxyribonuclease VII large subunit -
  Q7622_RS07470 (Q7622_07450) udk 1475568..1476206 (-) 639 WP_001181378.1 uridine kinase -
  Q7622_RS07475 (Q7622_07455) - 1476314..1476612 (-) 299 Protein_1479 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62791.28 Da        Isoelectric Point: 4.7067

>NTDB_id=791544 Q7622_RS07440 WP_000923573.1 1470132..1471799(-) (recN) [Streptococcus pneumoniae strain 2014C08-275]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=791544 Q7622_RS07440 WP_000923573.1 1470132..1471799(-) (recN) [Streptococcus pneumoniae strain 2014C08-275]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44