Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   PVK49_RS00335 Genome accession   NZ_CP118306
Coordinates   54359..54457 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20154608     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49359..59457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK49_RS00320 - 50233..51562 (+) 1330 Protein_29 hypothetical protein -
  PVK49_RS00325 (PVK49_00330) purB 51931..53223 (+) 1293 WP_023612869.1 adenylosuccinate lyase -
  PVK49_RS00330 (PVK49_00335) comR 53357..54268 (+) 912 WP_014635220.1 XRE family transcriptional regulator Regulator
  PVK49_RS00335 (PVK49_00340) comS 54359..54457 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  PVK49_RS00340 (PVK49_00345) ruvB 54488..55486 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  PVK49_RS00345 (PVK49_00350) - 55624..56061 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  PVK49_RS00350 (PVK49_00355) - 56084..56485 (+) 402 WP_011017240.1 MORN repeat-containing protein -
  PVK49_RS00355 (PVK49_00360) - 56482..58257 (+) 1776 WP_002987732.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=791446 PVK49_RS00335 WP_020833188.1 54359..54457(+) (comS) [Streptococcus pyogenes strain 20154608]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=791446 PVK49_RS00335 WP_020833188.1 54359..54457(+) (comS) [Streptococcus pyogenes strain 20154608]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437