Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LNGFDJGK_RS18915 Genome accession   NZ_CP118279
Coordinates   3967064..3968497 (+) Length   477 a.a.
NCBI ID   WP_045337043.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain LG3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3962064..3973497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNGFDJGK_RS18885 (LNGFDJGK_03739) - 3962631..3963608 (+) 978 WP_003861852.1 calcium/sodium antiporter -
  LNGFDJGK_RS18890 (LNGFDJGK_03740) kdsD 3963622..3964608 (+) 987 WP_003861853.1 arabinose-5-phosphate isomerase KdsD -
  LNGFDJGK_RS18895 (LNGFDJGK_03741) kdsC 3964623..3965189 (+) 567 WP_003861856.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LNGFDJGK_RS18900 (LNGFDJGK_03742) lptC 3965186..3965761 (+) 576 WP_059294315.1 LPS export ABC transporter periplasmic protein LptC -
  LNGFDJGK_RS18905 (LNGFDJGK_03743) lptA 3965730..3966284 (+) 555 WP_003861860.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  LNGFDJGK_RS18910 (LNGFDJGK_03744) lptB 3966291..3967016 (+) 726 WP_003861862.1 LPS export ABC transporter ATP-binding protein -
  LNGFDJGK_RS18915 (LNGFDJGK_03745) rpoN/rpoN1 3967064..3968497 (+) 1434 WP_045337043.1 RNA polymerase factor sigma-54 Machinery gene
  LNGFDJGK_RS18920 (LNGFDJGK_03746) hpf 3968520..3968807 (+) 288 WP_003861866.1 ribosome hibernation promoting factor -
  LNGFDJGK_RS18925 (LNGFDJGK_03747) ptsN 3968890..3969381 (+) 492 WP_003861869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LNGFDJGK_RS18930 (LNGFDJGK_03748) rapZ 3969427..3970281 (+) 855 WP_003861870.1 RNase adapter RapZ -
  LNGFDJGK_RS18935 (LNGFDJGK_03749) npr 3970278..3970550 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  LNGFDJGK_RS18940 (LNGFDJGK_03750) mtgA 3970590..3971315 (-) 726 WP_003861874.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LNGFDJGK_RS18945 (LNGFDJGK_03751) elbB 3971312..3971965 (-) 654 WP_045337045.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54126.04 Da        Isoelectric Point: 4.3358

>NTDB_id=791439 LNGFDJGK_RS18915 WP_045337043.1 3967064..3968497(+) (rpoN/rpoN1) [Enterobacter hormaechei strain LG3]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQTQDTETLDSVDALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESIGDDEIELEEIEAVLKRVQRFDPIGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLQINQQYASMCTSARNDADNQYIR
INLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=791439 LNGFDJGK_RS18915 WP_045337043.1 3967064..3968497(+) (rpoN/rpoN1) [Enterobacter hormaechei strain LG3]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAGCAACTGGCCATGACGCCGCAGCTCCAGCAGGCAATCCGTCTGTTGCA
GCTGTCCACGTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCGCTGCTGGAGCAGACCGATCTTCATG
ACGAGGTAGACGCCCAGCAGACGCAGGACACAGAAACGCTCGACTCCGTAGATGCACTCGAACAGAAAGAGATGCCGGAC
GAACTGCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCGGGTACCCCTTCCGGGACGCGTGCAGACTACCAGGACGA
TGAACTCCCGGTCTACCAGGGCGAAACTACCCAATCGCTTCAGGACTACCTGATGTGGCAGGTGGAGCTGACGCCTTTCT
CCGATACCGATCGCGCCATTGCCACCTCGATTGTCGATGCCGTTGACGACACGGGCTATTTGACCGTGACGCTGGACGAG
ATTCTTGAAAGCATCGGCGATGACGAGATTGAACTGGAAGAGATCGAAGCCGTCCTTAAACGCGTTCAGCGTTTCGACCC
GATTGGCGTCGCCGCGAAAGATCTGCGTGACTGCCTTCTGATCCAGCTTTCGCAGTTTGCTAAAGAGACACCGTGGATTG
ACGAAGCCCGGCTCATCATCAGCGATCATCTGGATCTGCTGGCGAACCACGACTTCCGCACCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAGGAAGCGGTGAATCTGATCCAGTCGCTCGATCCGCGTCCGGGGCAGTCGATTCAGACCAG
CGAACCGGAATATGTCATTCCCGATGTGCTGGTGAGAAAACACAATGGCCGCTGGGTCGTTGAACTGAACGCCGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAATACGCCTCCATGTGCACCAGCGCCCGTAACGACGCTGATAATCAATACATTCGC
ATCAACCTTCAGGAAGCACGCTGGTTGATTAAGAGTCTGGAGAGCCGTAATGACACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCATTCTTTGAGCAGGGCGAAGAGTTTATGAAACCGATGGTGCTGGCGGACATAGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGCCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAACACCGAAGGCGGCGGCGAAGCCTCGTCGACGGCCATTCGCGCACTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTCAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTCGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48