Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LNGFDJGK_RS07370 Genome accession   NZ_CP118279
Coordinates   1569683..1570309 (+) Length   208 a.a.
NCBI ID   WP_045336729.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain LG3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1564683..1575309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNGFDJGK_RS07350 (LNGFDJGK_01465) - 1565082..1566842 (-) 1761 WP_003858160.1 Lon protease family protein -
  LNGFDJGK_RS07355 (LNGFDJGK_01466) matP 1567029..1567481 (+) 453 WP_003858158.1 macrodomain Ter protein MatP -
  LNGFDJGK_RS07360 (LNGFDJGK_01467) ompA 1567547..1568599 (-) 1053 WP_003858156.1 porin OmpA -
  LNGFDJGK_RS07365 (LNGFDJGK_01468) sulA 1568956..1569465 (-) 510 WP_003858155.1 SOS-induced cell division inhibitor SulA -
  LNGFDJGK_RS07370 (LNGFDJGK_01469) sxy/tfoX 1569683..1570309 (+) 627 WP_045336729.1 TfoX/Sxy family DNA transformation protein Regulator
  LNGFDJGK_RS07375 (LNGFDJGK_01470) yccS 1570266..1572428 (-) 2163 WP_045336727.1 YccS family putative transporter -
  LNGFDJGK_RS07380 (LNGFDJGK_01471) - 1572447..1572893 (-) 447 WP_003858149.1 YccF domain-containing protein -
  LNGFDJGK_RS07385 (LNGFDJGK_01472) helD 1573016..1575070 (+) 2055 WP_023315769.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24032.60 Da        Isoelectric Point: 9.4592

>NTDB_id=791428 LNGFDJGK_RS07370 WP_045336729.1 1569683..1570309(+) (sxy/tfoX) [Enterobacter hormaechei strain LG3]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSTKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=791428 LNGFDJGK_RS07370 WP_045336729.1 1569683..1570309(+) (sxy/tfoX) [Enterobacter hormaechei strain LG3]
ATGAAAAAGATATCTTATGAGCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTACAAAATACTGTGTAAAAAACGCTTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.416

97.115

0.567