Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   Q7624_RS08545 Genome accession   NZ_CP131709
Coordinates   1673877..1674836 (+) Length   319 a.a.
NCBI ID   WP_000778475.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2016S11-245     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1668877..1679836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7624_RS08515 (Q7624_08490) - 1669036..1669800 (-) 765 WP_000082879.1 nuclear transport factor 2 family protein -
  Q7624_RS08520 (Q7624_08495) - 1669804..1670247 (-) 444 WP_000872566.1 MarR family transcriptional regulator -
  Q7624_RS08525 (Q7624_08500) - 1670929..1671225 (-) 297 WP_000230149.1 bacteriocin immunity protein -
  Q7624_RS08530 (Q7624_08505) pepA 1671247..1672311 (-) 1065 WP_000209199.1 glutamyl aminopeptidase -
  Q7624_RS08535 (Q7624_08510) galE 1672712..1673431 (+) 720 WP_001814725.1 UDP-glucose 4-epimerase GalE -
  Q7624_RS08540 (Q7624_08515) - 1673428..1673580 (+) 153 WP_001108392.1 hypothetical protein -
  Q7624_RS08545 (Q7624_08520) ceuB 1673877..1674836 (+) 960 WP_000778475.1 ABC transporter permease Machinery gene
  Q7624_RS08550 (Q7624_08525) - 1674826..1675782 (+) 957 WP_001193665.1 iron chelate uptake ABC transporter family permease subunit -
  Q7624_RS08555 (Q7624_08530) - 1675779..1676531 (+) 753 WP_000764303.1 ATP-binding cassette domain-containing protein -
  Q7624_RS08560 (Q7624_08535) - 1676627..1677592 (+) 966 WP_000858251.1 siderophore ABC transporter substrate-binding protein -
  Q7624_RS08565 (Q7624_08540) yidD 1677817..1678059 (-) 243 WP_000821615.1 membrane protein insertion efficiency factor YidD -
  Q7624_RS08570 (Q7624_08545) - 1678059..1678781 (-) 723 WP_001222228.1 pseudouridine synthase -
  Q7624_RS08575 (Q7624_08550) scpB 1678768..1679337 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35391.28 Da        Isoelectric Point: 9.2573

>NTDB_id=791315 Q7624_RS08545 WP_000778475.1 1673877..1674836(+) (ceuB) [Streptococcus pneumoniae strain 2016S11-245]
MKLSYYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKCYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=791315 Q7624_RS08545 WP_000778475.1 1673877..1674836(+) (ceuB) [Streptococcus pneumoniae strain 2016S11-245]
ATGAAACTTTCTTATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGTGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains


Predicted by InterProScan.

(10-312)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.419

97.179

0.364