Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PTQ21_RS02965 Genome accession   NZ_CP118270
Coordinates   634207..635160 (-) Length   317 a.a.
NCBI ID   WP_076287502.1    Uniprot ID   -
Organism   Paenibacillus marchantiae strain BMpBG1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629207..640160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTQ21_RS02945 (PTQ21_02945) - 629697..631157 (-) 1461 WP_240321539.1 spore germination protein -
  PTQ21_RS02950 (PTQ21_02950) - 631462..632448 (-) 987 WP_274568764.1 siderophore ABC transporter substrate-binding protein -
  PTQ21_RS02955 (PTQ21_02955) - 632490..633248 (-) 759 WP_063567230.1 ABC transporter ATP-binding protein -
  PTQ21_RS02960 (PTQ21_02960) - 633242..634210 (-) 969 WP_269453530.1 iron chelate uptake ABC transporter family permease subunit -
  PTQ21_RS02965 (PTQ21_02965) ceuB 634207..635160 (-) 954 WP_076287502.1 ABC transporter permease Machinery gene
  PTQ21_RS02970 (PTQ21_02970) - 635402..635737 (-) 336 WP_063567228.1 hypothetical protein -
  PTQ21_RS02975 (PTQ21_02975) - 635786..636487 (-) 702 WP_063567227.1 pirin family protein -
  PTQ21_RS02980 (PTQ21_02980) - 636713..637123 (-) 411 WP_063567226.1 DoxX family protein -
  PTQ21_RS02985 (PTQ21_02985) - 637164..638024 (-) 861 WP_090809010.1 M56 family metallopeptidase -
  PTQ21_RS02990 (PTQ21_02990) - 638026..638442 (-) 417 WP_063567224.1 BlaI/MecI/CopY family transcriptional regulator -
  PTQ21_RS02995 (PTQ21_02995) - 638691..640154 (-) 1464 WP_063567223.1 catalase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35061.26 Da        Isoelectric Point: 9.8858

>NTDB_id=791209 PTQ21_RS02965 WP_076287502.1 634207..635160(-) (ceuB) [Paenibacillus marchantiae strain BMpBG1]
MKLGYMLIVLAFLSIVYLFIGNSDISPMDIFHLTPVQLQVLQVSRFPRLISILVAGISMSVIGLIMQQLTRNRFVSPTTA
GTMDSARLGILVTLMWFPGASPLQKMLVAFAFALAGTLIFMRILEKVKFKDTIYIALLGLMFGNIVSSVTTFFAYKNDLI
QNMSSWLQGDFSTIMKGRYELIYISIPLLIIVYLFANRFTLAGMGEDFSTNLGLAYRKVVNLGLILVAMVSAVVIITVGT
IPFLGLVVPNIVTLYKGDNLRDTLPHTAVLGAIFVLVCDILGQLIIYPYQLSISLTVGVVGSVLFLYLLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=791209 PTQ21_RS02965 WP_076287502.1 634207..635160(-) (ceuB) [Paenibacillus marchantiae strain BMpBG1]
ATGAAGTTAGGCTATATGTTGATCGTGCTGGCTTTTTTGTCTATCGTATACTTGTTTATTGGCAATTCAGACATTTCGCC
CATGGATATATTTCATTTGACCCCAGTCCAGCTTCAGGTGTTACAAGTCAGTCGTTTTCCCCGTCTAATCAGCATCCTTG
TCGCAGGTATCAGTATGAGTGTCATTGGACTGATCATGCAGCAGCTGACACGCAACCGATTTGTTTCTCCGACAACGGCC
GGAACAATGGACTCAGCCCGATTGGGTATCCTCGTTACTTTGATGTGGTTTCCCGGTGCTTCTCCACTGCAAAAAATGTT
GGTCGCTTTTGCCTTCGCACTGGCTGGAACGCTAATTTTTATGCGGATACTGGAGAAAGTCAAATTCAAGGATACGATAT
ACATTGCTCTCCTTGGTTTGATGTTTGGCAATATTGTAAGTTCAGTCACGACCTTTTTTGCTTACAAAAACGATTTGATC
CAGAACATGTCGTCCTGGCTGCAAGGTGACTTCTCCACGATTATGAAGGGACGTTATGAACTGATCTATATCAGTATTCC
GTTGCTTATTATCGTATATCTGTTCGCTAATCGCTTTACACTTGCGGGCATGGGTGAAGATTTCTCAACCAACCTTGGAC
TGGCTTATCGTAAAGTGGTTAATCTCGGACTGATTCTGGTTGCCATGGTTTCAGCCGTCGTCATTATTACCGTAGGTACA
ATCCCGTTTCTGGGTCTTGTAGTACCAAATATTGTGACGTTGTATAAGGGTGACAACTTGCGGGATACATTGCCTCATAC
GGCAGTGCTCGGTGCGATTTTTGTTCTGGTCTGCGATATTTTGGGTCAATTGATTATTTATCCTTATCAGCTCTCCATCA
GTTTGACTGTGGGAGTTGTAGGTAGCGTGCTGTTTCTGTATTTATTGCTTCGAAGAAAGGCTTATGAATCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.949

99.685

0.508