Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KATP_RS14925 Genome accession   NZ_AP022665
Coordinates   3129962..3130579 (-) Length   205 a.a.
NCBI ID   WP_035892396.1    Uniprot ID   A0AB35X8G7
Organism   Kluyvera ascorbata strain TP1631     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3124962..3135579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KATP_RS14910 (KATP_29590) helD 3125204..3127258 (-) 2055 WP_035892392.1 DNA helicase IV -
  KATP_RS14915 (KATP_29600) - 3127381..3127827 (+) 447 WP_035892393.1 YccF domain-containing protein -
  KATP_RS14920 (KATP_29610) yccS 3127846..3129972 (+) 2127 WP_035892394.1 YccS family putative transporter -
  KATP_RS14925 (KATP_29620) sxy/tfoX 3129962..3130579 (-) 618 WP_035892396.1 TfoX/Sxy family DNA transformation protein Regulator
  KATP_RS14930 (KATP_29630) sulA 3130798..3131307 (+) 510 WP_035892397.1 SOS-induced cell division inhibitor SulA -
  KATP_RS14935 (KATP_29640) ompA 3131662..3132717 (+) 1056 WP_035892398.1 porin OmpA -
  KATP_RS14940 (KATP_29650) matP 3132803..3133258 (-) 456 WP_035892399.1 macrodomain Ter protein MatP -
  KATP_RS14945 (KATP_29660) - 3133443..3135203 (+) 1761 WP_035892400.1 AAA family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23532.50 Da        Isoelectric Point: 10.2091

>NTDB_id=79114 KATP_RS14925 WP_035892396.1 3129962..3130579(-) (sxy/tfoX) [Kluyvera ascorbata strain TP1631]
MKKISYKRIYQSQKYFSLLGKIKSRALFGGYSLAVNDAVFAMVSEGELYLRMCEESATYQAQHSPPLLTLRKRGCSQQLK
YFHVGERLWSDEPVLLQLGKFSLEDALREKKQQKSLRIKDLPNLSFHMELLLSEAGIKDAQMLQHLGAEMAWIRLRKIRK
QLSINVLYSLEGAIMGVHSAALPAQRRQELQEWALAHVKTEGVRP

Nucleotide


Download         Length: 618 bp        

>NTDB_id=79114 KATP_RS14925 WP_035892396.1 3129962..3130579(-) (sxy/tfoX) [Kluyvera ascorbata strain TP1631]
ATGAAGAAAATATCATATAAACGGATTTATCAGTCCCAGAAATATTTTTCGCTGTTGGGCAAAATCAAGTCGCGGGCGCT
GTTTGGTGGCTATAGTCTTGCCGTCAATGATGCGGTATTTGCAATGGTCTCTGAAGGGGAACTCTACCTGAGGATGTGCG
AGGAAAGTGCGACCTATCAGGCTCAGCATTCGCCTCCATTACTGACATTACGTAAGCGAGGGTGTTCACAGCAGTTAAAG
TATTTCCATGTTGGCGAACGGCTCTGGTCTGACGAACCGGTCTTACTTCAGCTTGGCAAATTTTCTCTCGAGGATGCGCT
TCGAGAAAAGAAACAACAGAAATCATTACGGATAAAAGATCTGCCTAATCTCTCATTTCATATGGAGCTGTTGTTAAGTG
AAGCGGGAATTAAAGATGCTCAAATGCTTCAGCATCTGGGGGCAGAAATGGCATGGATTCGGCTGCGTAAGATTCGTAAG
CAGCTGAGTATTAATGTGCTGTATTCTCTGGAAGGGGCGATTATGGGCGTTCACTCAGCCGCGCTCCCGGCGCAACGGCG
CCAGGAGCTACAGGAATGGGCGTTAGCCCACGTGAAAACGGAGGGGGTCAGGCCATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

54.872

95.122

0.522

Multiple sequence alignment