Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   PUW21_RS15350 Genome accession   NZ_CP118167
Coordinates   2896872..2897618 (-) Length   248 a.a.
NCBI ID   WP_010886586.1    Uniprot ID   A0AAE2SM29
Organism   Bacillus subtilis strain 21855     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2891872..2902618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW21_RS15320 (PUW21_15320) - 2892200..2892634 (+) 435 WP_103330184.1 helix-turn-helix transcriptional regulator -
  PUW21_RS15325 (PUW21_15325) - 2892648..2893094 (+) 447 WP_060399203.1 ImmA/IrrE family metallo-endopeptidase -
  PUW21_RS15330 (PUW21_15330) - 2893125..2894561 (+) 1437 WP_274358011.1 recombinase family protein -
  PUW21_RS15335 (PUW21_15335) radC 2894560..2894981 (-) 422 Protein_2976 DNA repair protein RadC -
  PUW21_RS15340 (PUW21_15340) maf 2895018..2895587 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  PUW21_RS15345 (PUW21_15345) spoIIB 2895740..2896738 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  PUW21_RS15350 (PUW21_15350) comC 2896872..2897618 (-) 747 WP_010886586.1 A24 family peptidase Machinery gene
  PUW21_RS15355 (PUW21_15355) folC 2897758..2899050 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  PUW21_RS15360 (PUW21_15360) valS 2899110..2901752 (-) 2643 WP_004398606.1 valine--tRNA ligase -
  PUW21_RS15365 (PUW21_15365) - 2902200..2902391 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26435.04 Da        Isoelectric Point: 9.7944

>NTDB_id=790991 PUW21_RS15350 WP_010886586.1 2896872..2897618(-) (comC) [Bacillus subtilis strain 21855]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGISLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=790991 PUW21_RS15350 WP_010886586.1 2896872..2897618(-) (comC) [Bacillus subtilis strain 21855]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

100

100

1