Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   Q7627_RS08805 Genome accession   NZ_CP131706
Coordinates   1725723..1726682 (+) Length   319 a.a.
NCBI ID   WP_000777237.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2018N21-288     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1720723..1731682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7627_RS08775 (Q7627_08760) - 1720923..1721687 (-) 765 WP_000082881.1 nuclear transport factor 2 family protein -
  Q7627_RS08780 (Q7627_08765) - 1721691..1722134 (-) 444 WP_000655200.1 MarR family transcriptional regulator -
  Q7627_RS08785 (Q7627_08770) - 1722816..1723112 (-) 297 WP_000230153.1 hypothetical protein -
  Q7627_RS08790 (Q7627_08775) pepA 1723134..1724198 (-) 1065 WP_000209199.1 glutamyl aminopeptidase -
  Q7627_RS08795 (Q7627_08780) galE 1724599..1725300 (+) 702 WP_000167830.1 UDP-glucose 4-epimerase GalE -
  Q7627_RS08800 - 1725316..1725426 (+) 111 WP_001108391.1 hypothetical protein -
  Q7627_RS08805 (Q7627_08785) ceuB 1725723..1726682 (+) 960 WP_000777237.1 ABC transporter permease Machinery gene
  Q7627_RS08810 (Q7627_08790) - 1726672..1727628 (+) 957 WP_001193668.1 iron chelate uptake ABC transporter family permease subunit -
  Q7627_RS08815 (Q7627_08795) - 1727625..1728377 (+) 753 WP_000764303.1 ATP-binding cassette domain-containing protein -
  Q7627_RS08820 (Q7627_08800) - 1728473..1729438 (+) 966 WP_000858263.1 siderophore ABC transporter substrate-binding protein -
  Q7627_RS08825 (Q7627_08805) yidD 1729663..1729905 (-) 243 WP_000821640.1 membrane protein insertion efficiency factor YidD -
  Q7627_RS08830 (Q7627_08810) - 1729905..1730627 (-) 723 WP_001222228.1 pseudouridine synthase -
  Q7627_RS08835 (Q7627_08815) scpB 1730614..1731183 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35432.32 Da        Isoelectric Point: 9.7465

>NTDB_id=790967 Q7627_RS08805 WP_000777237.1 1725723..1726682(+) (ceuB) [Streptococcus pneumoniae strain 2018N21-288]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSILFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=790967 Q7627_RS08805 WP_000777237.1 1725723..1726682(+) (ceuB) [Streptococcus pneumoniae strain 2018N21-288]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCCTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCTTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains


Predicted by InterProScan.

(10-312)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.742

97.179

0.367