Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PUW21_RS05650 Genome accession   NZ_CP118167
Coordinates   1092692..1093270 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain 21855     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087692..1098270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW21_RS05630 (PUW21_05630) hemAT 1088203..1089501 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  PUW21_RS05635 (PUW21_05635) yhfW 1089640..1091169 (-) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  PUW21_RS05640 (PUW21_05640) yhxC 1091281..1092138 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  PUW21_RS05645 (PUW21_05645) yhzC 1092166..1092399 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  PUW21_RS05650 (PUW21_05650) comK 1092692..1093270 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  PUW21_RS05655 (PUW21_05655) yhxD 1093317..1094216 (-) 900 WP_274358417.1 SDR family oxidoreductase -
  PUW21_RS05660 (PUW21_05660) yhjA 1094433..1094702 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  PUW21_RS05665 (PUW21_05665) yhjB 1094745..1096214 (-) 1470 WP_032721274.1 sodium:solute symporter -
  PUW21_RS05670 (PUW21_05670) yhjC 1096211..1096411 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  PUW21_RS05675 (PUW21_05675) - 1096619..1096981 (-) 363 WP_024571727.1 hypothetical protein -
  PUW21_RS05680 (PUW21_05680) yhjE 1097133..1097756 (+) 624 WP_010886465.1 VTT domain-containing protein -
  PUW21_RS05685 (PUW21_05685) lepB 1097758..1098264 (+) 507 WP_032721278.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=790951 PUW21_RS05650 WP_029317573.1 1092692..1093270(+) (comK) [Bacillus subtilis strain 21855]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=790951 PUW21_RS05650 WP_029317573.1 1092692..1093270(+) (comK) [Bacillus subtilis strain 21855]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995