Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   Q7627_RS05760 Genome accession   NZ_CP131706
Coordinates   1141143..1142810 (-) Length   555 a.a.
NCBI ID   WP_000923567.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2018N21-288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1136143..1147810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7627_RS05730 (Q7627_05720) - 1136383..1137185 (-) 803 Protein_1132 IS5 family transposase -
  Q7627_RS05735 (Q7627_05725) - 1137193..1137495 (-) 303 WP_050281139.1 PTS sugar transporter subunit IIB -
  Q7627_RS05740 (Q7627_05730) - 1137533..1138009 (-) 477 Protein_1134 PTS sugar transporter subunit IIA -
  Q7627_RS05745 (Q7627_05735) - 1138188..1138430 (+) 243 WP_000693369.1 hypothetical protein -
  Q7627_RS05750 (Q7627_05740) lepA 1138511..1140334 (-) 1824 WP_001047212.1 translation elongation factor 4 -
  Q7627_RS05755 (Q7627_05745) - 1140413..1141141 (-) 729 WP_000133339.1 metallophosphoesterase family protein -
  Q7627_RS05760 (Q7627_05750) recN 1141143..1142810 (-) 1668 WP_000923567.1 DNA repair protein RecN Machinery gene
  Q7627_RS05765 (Q7627_05755) - 1142817..1143248 (-) 432 WP_001034415.1 arginine repressor -
  Q7627_RS05770 (Q7627_05760) - 1143241..1144056 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  Q7627_RS05775 (Q7627_05765) - 1144049..1144924 (-) 876 WP_000743845.1 polyprenyl synthetase family protein -
  Q7627_RS05780 (Q7627_05770) - 1144921..1145133 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  Q7627_RS05785 (Q7627_05775) xseA 1145111..1146451 (-) 1341 WP_000417458.1 exodeoxyribonuclease VII large subunit -
  Q7627_RS05790 (Q7627_05780) udk 1146579..1147217 (-) 639 WP_001181378.1 uridine kinase -
  Q7627_RS05795 (Q7627_05785) - 1147325..1147627 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62804.28 Da        Isoelectric Point: 4.6517

>NTDB_id=790942 Q7627_RS05760 WP_000923567.1 1141143..1142810(-) (recN) [Streptococcus pneumoniae strain 2018N21-288]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSEIYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=790942 Q7627_RS05760 WP_000923567.1 1141143..1142810(-) (recN) [Streptococcus pneumoniae strain 2018N21-288]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGATCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44