Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PUV55_RS11270 Genome accession   NZ_CP118165
Coordinates   2221695..2222036 (+) Length   113 a.a.
NCBI ID   WP_010786294.1    Uniprot ID   -
Organism   Glaesserella parasuis strain XP11     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2216695..2227036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS11250 (PUV55_11250) - 2217970..2218557 (-) 588 WP_274358994.1 FMN-dependent NADH-azoreductase -
  PUV55_RS11255 (PUV55_11255) waaF 2218653..2219705 (-) 1053 WP_075592703.1 lipopolysaccharide heptosyltransferase II -
  PUV55_RS11260 (PUV55_11260) - 2219714..2220112 (-) 399 WP_005714011.1 MliC family protein -
  PUV55_RS11265 (PUV55_11265) - 2220172..2221437 (-) 1266 WP_005714013.1 LysM-like peptidoglycan-binding domain-containing protein -
  PUV55_RS11270 (PUV55_11270) comEA/comE1 2221695..2222036 (+) 342 WP_010786294.1 ComEA family DNA-binding protein Machinery gene
  PUV55_RS11275 (PUV55_11275) - 2222136..2222581 (-) 446 Protein_2190 IS5 family transposase -
  PUV55_RS11280 (PUV55_11280) - 2222718..2223671 (+) 954 WP_274358995.1 ISAs1 family transposase -
  PUV55_RS11285 (PUV55_11285) - 2223661..2223816 (+) 156 WP_021115148.1 hypothetical protein -
  PUV55_RS11290 (PUV55_11290) epmA 2223940..2224920 (+) 981 WP_035492186.1 elongation factor P--(R)-beta-lysine ligase -
  PUV55_RS11295 (PUV55_11295) - 2225030..2225812 (+) 783 WP_016527622.1 TatD family hydrolase -
  PUV55_RS11300 (PUV55_11300) - 2225850..2226377 (+) 528 WP_021114781.1 DUF1523 family protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12407.27 Da        Isoelectric Point: 9.8972

>NTDB_id=790920 PUV55_RS11270 WP_010786294.1 2221695..2222036(+) (comEA/comE1) [Glaesserella parasuis strain XP11]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=790920 PUV55_RS11270 WP_010786294.1 2221695..2222036(+) (comEA/comE1) [Glaesserella parasuis strain XP11]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

98.23

100

0.982
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602