Detailed information NTG0790882

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: PTA87_RS11750
• Genome accession: NZ_CP118163
• Coordinates: 2367410..2368783 (-)
• Length: 457 a.a.
• NCBI ID: WP_252540539.1
• Uniprot ID: -
• Organism: Staphylococcus hyicus strain SG-7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2362410..2373783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PTA87_RS11725	cysE	2362644..2363270 (-)	627	WP_168429109.1	serine O-acetyltransferase	-
PTA87_RS11730	gltX	2363595..2365049 (-)	1455	WP_259489155.1	glutamate--tRNA ligase	-
PTA87_RS11735	ispF	2365162..2365638 (-)	477	WP_259489156.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PTA87_RS11740	ispD	2365631..2366329 (-)	699	WP_274311936.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PTA87_RS11745	-	2366332..2367393 (-)	1062	WP_252540536.1	PIN/TRAM domain-containing protein	-
PTA87_RS11750	radA	2367410..2368783 (-)	1374	WP_252540539.1	DNA repair protein RadA	Machinery gene
PTA87_RS11755	-	2368987..2371464 (-)	2478	WP_119635492.1	ATP-dependent Clp protease ATP-binding subunit	-
PTA87_RS11760	-	2371477..2372481 (-)	1005	WP_082021559.1	protein arginine kinase	-
PTA87_RS11765	-	2372474..2372995 (-)	522	WP_371129290.1	UvrB/UvrC motif-containing protein	-
PTA87_RS11770	-	2373007..2373468 (-)	462	WP_039647067.1	CtsR family transcriptional regulator	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 50330.00 Da
• Isoelectric Point: 8.0136

>NTDB_id=790882 PTA87_RS11750 WP_252540539.1 2367410..2368783(-) (radA) [Staphylococcus hyicus strain SG-7]
MAKKKITFECTACGYQSPKWMGKCPNCGAWNSMEESLEQKVAHPKHGVRTQKTTHAKVQTLNEIKNEKTPRILTNSDEFN
RVLGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKKKKVLYITGEESLNQTKLRADRLDEDASALNVFAETDLEVIHEA
VKKVEPELIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQAGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIIIATASSFKDQAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPENIEVIGVTSTHEALKYALKQR

Nucleotide

• Length: 1374 bp

>NTDB_id=790882 PTA87_RS11750 WP_252540539.1 2367410..2368783(-) (radA) [Staphylococcus hyicus strain SG-7]
GTGGCCAAAAAAAAGATTACATTTGAATGTACTGCATGCGGATATCAGTCTCCAAAATGGATGGGGAAATGTCCAAATTG
CGGTGCATGGAATTCAATGGAGGAATCATTAGAACAAAAAGTAGCACATCCAAAACATGGTGTGCGTACACAAAAAACGA
CACATGCGAAAGTACAAACGTTAAATGAAATTAAAAATGAAAAAACACCACGCATTCTTACAAATAGTGATGAGTTTAAT
CGTGTACTTGGAGGCGGTATTGTTCAAGGTTCTCTCGTATTGATCGGTGGCGACCCAGGTATCGGTAAATCCACACTACT
CCTTCAAATGTGTGCTGCGTTATCAAAGAAGAAAAAAGTGCTTTATATTACAGGCGAAGAATCACTGAACCAAACCAAAT
TACGTGCAGACCGTTTGGATGAAGATGCCAGTGCGTTGAATGTATTTGCAGAAACAGACCTTGAAGTGATTCACGAGGCA
GTTAAAAAAGTAGAACCTGAGTTAATCGTCGTGGACTCTATTCAAACGATATACCATCCTGAAATTAGTTCTGCACCAGG
ATCGGTGTCCCAAGTGAGAGAAAGTACTCAAAGTCTGATGCATATTGCGAAACAAATGAATATCGCCACATTTATTGTTG
GGCATGTGACGAAAGAAGGTCAAATCGCTGGACCGAGATTGTTAGAACATATGGTGGATACGGTGTTGTATTTCGAAGGA
GACGAACATCATGCGTATCGTATTTTACGTGCCGTTAAAAATCGTTTTGGTTCAACGAATGAAATGGGTATTTTTGAAAT
GAAGCAAGCTGGTTTAAAAAGTGTCCCAAATCCCTCTGAAATGTTTTTAGAAGAGCGTTCAACGAATGTGCCAGGGTCTA
CGATTGTTGCGACGATGGAAGGGACACGCCCTTTACTTATTGAAGTGCAAGCGTTAGTTACACCTACAACATTTAACAAC
CCAAGACGCATGGCCACAGGGATAGATCATAACCGTCTTAGTTTATTAATGGCTGTGTTAGAGAAAAAAGAGGGGTATTT
ATTACAACAACAGGATGCATACATTAAAGTTGCAGGTGGTGTCAAATTAAGTGAGCCCGCTGTGGATTTAGGTATCATTA
TTGCGACAGCTTCAAGTTTTAAAGATCAAGCAGTTGACGGATTAGATTGTTTTATTGGTGAAGTTGGCTTAACTGGCGAA
GTACGCAGAGTGTCACGTATCGAGCAACGTGTACAAGAAGCGGCGAAGTTAGGTTTTAAACGTGTCATTATCCCAAAAAC
CAATATCGGTGGATGGACATTTCCAGAAAATATAGAAGTTATCGGTGTGACTTCAACACATGAAGCTTTAAAATATGCCT
TAAAACAGAGATAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (345-428)

• AAA domain (AAA_25) (68-220)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	66.228	99.781	0.661
radA	Streptococcus pneumoniae Rx1	59.735	98.906	0.591
radA	Streptococcus pneumoniae D39	59.735	98.906	0.591
radA	Streptococcus pneumoniae R6	59.735	98.906	0.591
radA	Streptococcus pneumoniae TIGR4	59.735	98.906	0.591
radA	Streptococcus mitis NCTC 12261	59.735	98.906	0.591
radA	Streptococcus mitis SK321	59.735	98.906	0.591