Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PUP78_RS10245 Genome accession   NZ_CP118155
Coordinates   2233157..2233792 (+) Length   211 a.a.
NCBI ID   WP_025804353.1    Uniprot ID   A0AAQ1FKP2
Organism   Pseudomonas chlororaphis strain ATCC 17411     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2228157..2238792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP78_RS10225 (PUP78_10225) - 2228403..2229335 (+) 933 WP_025804356.1 ABC transporter ATP-binding protein -
  PUP78_RS10230 (PUP78_10230) - 2229332..2230111 (+) 780 WP_007931651.1 ABC transporter permease -
  PUP78_RS10235 (PUP78_10235) - 2230160..2230675 (-) 516 WP_025804355.1 DUF2062 domain-containing protein -
  PUP78_RS10240 (PUP78_10240) comA 2230823..2233054 (+) 2232 WP_124323848.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP78_RS10245 (PUP78_10245) exbB 2233157..2233792 (+) 636 WP_025804353.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP78_RS10250 (PUP78_10250) - 2233789..2234217 (+) 429 WP_009047818.1 ExbD/TolR family protein -
  PUP78_RS10255 (PUP78_10255) lpxK 2234217..2235227 (+) 1011 WP_102676843.1 tetraacyldisaccharide 4'-kinase -
  PUP78_RS10260 (PUP78_10260) - 2235251..2235436 (+) 186 WP_007931663.1 Trm112 family protein -
  PUP78_RS10265 (PUP78_10265) kdsB 2235433..2236197 (+) 765 WP_124302557.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP78_RS10270 (PUP78_10270) - 2236197..2236661 (+) 465 WP_124323849.1 low molecular weight protein-tyrosine-phosphatase -
  PUP78_RS10275 (PUP78_10275) murB 2236658..2237677 (+) 1020 WP_025804350.1 UDP-N-acetylmuramate dehydrogenase -
  PUP78_RS10280 (PUP78_10280) - 2237931..2238401 (+) 471 WP_016702177.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22918.08 Da        Isoelectric Point: 7.4247

>NTDB_id=790804 PUP78_RS10245 WP_025804353.1 2233157..2233792(+) (exbB) [Pseudomonas chlororaphis strain ATCC 17411]
MWELVISGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=790804 PUP78_RS10245 WP_025804353.1 2233157..2233792(+) (exbB) [Pseudomonas chlororaphis strain ATCC 17411]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCCGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCTCCCCTGGGGGAAATCCTCGCGGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAGTGCATCGAAGAGGCGGCTGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACTATTGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867