Detailed information NTG0790787

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP71_RS22425
• Genome accession: NZ_CP118154
• Coordinates: 4898931..4900259 (-)
• Length: 442 a.a.
• NCBI ID: WP_053262729.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17414
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4893931..4905259

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP71_RS22410 (PUP71_22410)	-	4894296..4897364 (+)	3069	WP_053262731.1	pilus assembly protein	-
PUP71_RS22415 (PUP71_22415)	-	4897378..4897779 (+)	402	WP_007924724.1	type IV pilin protein	-
PUP71_RS22420 (PUP71_22420)	thiO	4897834..4898934 (+)	1101	WP_053262730.1	glycine oxidase ThiO	-
PUP71_RS22425 (PUP71_22425)	pilR	4898931..4900259 (-)	1329	WP_053262729.1	sigma-54-dependent transcriptional regulator	Regulator
PUP71_RS22430 (PUP71_22430)	-	4900541..4900774 (-)	234	WP_053262728.1	PP0621 family protein	-
PUP71_RS22435 (PUP71_22435)	-	4900909..4901931 (-)	1023	WP_053262727.1	outer membrane protein assembly factor BamD	-
PUP71_RS22440 (PUP71_22440)	rluD	4902084..4903046 (+)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP71_RS22445 (PUP71_22445)	pgeF	4903043..4903768 (+)	726	WP_053262726.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48772.32 Da
• Isoelectric Point: 9.4419

>NTDB_id=790787 PUP71_RS22425 WP_053262729.1 4898931..4900259(-) (pilR) [Pseudomonas chlororaphis strain ATCC 17414]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAIHALKAGAIDFLSKPVALARLRELLNGALPGSTPPPPASGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVHAGRFRQDLYYRLNVIELPVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGLAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790787 PUP71_RS22425 WP_053262729.1 4898931..4900259(-) (pilR) [Pseudomonas chlororaphis strain ATCC 17414]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTACCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGATCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCTTGCGCGAACTGCTGAATGGTGCCCTGCCCGGATCGACACCCCCGCCCCCTGCTAGCGGTCCATTGC
TCGGCGATTCAGCCGCCATGCACAAGCTGCGCGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGACCAGGGTCCTCGAGCCAGCCACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAAGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTGCGGTGCGTCGGTGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACTCACAAGGCGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTATCGCC
TGAACGTGATCGAGCTGCCGGTACCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCTGGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACGCCCAACGGCGCCCACCCGGCCATCACGCCCGGCCTGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGACTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGCTCGATGCGCTACCGGCTGAAGAAGCTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	68.172	100	0.683
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457