Detailed information NTG0790697

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP54_RS07610
• Genome accession: NZ_CP118151
• Coordinates: 1662824..1665055 (+)
• Length: 743 a.a.
• NCBI ID: WP_053260193.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 9446
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1657824..1670055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP54_RS07585 (PUP54_07585)	-	1658945..1659604 (+)	660	WP_007931646.1	transglutaminase-like domain-containing protein	-
PUP54_RS07590 (PUP54_07590)	-	1659647..1660270 (+)	624	WP_053260191.1	glutathione S-transferase family protein	-
PUP54_RS07595 (PUP54_07595)	-	1660403..1661335 (+)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
PUP54_RS07600 (PUP54_07600)	-	1661332..1662111 (+)	780	WP_007931651.1	ABC transporter permease	-
PUP54_RS07605 (PUP54_07605)	-	1662160..1662675 (-)	516	WP_053260192.1	DUF2062 domain-containing protein	-
PUP54_RS07610 (PUP54_07610)	comA	1662824..1665055 (+)	2232	WP_053260193.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP54_RS07615 (PUP54_07615)	exbB	1665158..1665793 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP54_RS07620 (PUP54_07620)	-	1665790..1666218 (+)	429	WP_007931660.1	ExbD/TolR family protein	-
PUP54_RS07625 (PUP54_07625)	lpxK	1666218..1667228 (+)	1011	WP_053260194.1	tetraacyldisaccharide 4'-kinase	-
PUP54_RS07630 (PUP54_07630)	-	1667251..1667436 (+)	186	WP_007931663.1	Trm112 family protein	-
PUP54_RS07635 (PUP54_07635)	kdsB	1667433..1668197 (+)	765	WP_053260195.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP54_RS07640 (PUP54_07640)	-	1668197..1668661 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
PUP54_RS07645 (PUP54_07645)	murB	1668658..1669677 (+)	1020	WP_053260196.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81142.21 Da
• Isoelectric Point: 9.7323

>NTDB_id=790697 PUP54_RS07610 WP_053260193.1 1662824..1665055(+) (comA) [Pseudomonas chlororaphis strain ATCC 9446]
MRTGMLALAAGLLCLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQWALDDRLAEPLDGQTHWLEG
RVVGLPQQTEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLATTRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVAHLDLMLLSHADADHAGGA
DAISRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790697 PUP54_RS07610 WP_053260193.1 1662824..1665055(+) (comA) [Pseudomonas chlororaphis strain ATCC 9446]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTATGCCTGCGCTTTTTGCCGGCGCTACCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTCTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGATGATCGTTTGGCGGAACCGCTCGACGGGCAGACTCACTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGACCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGCCGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAATTGCTGGCCACCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCATGGGCGCGCCGGCGGCCTGGCGGCCCTGGTACTGGGCGACGGCTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGTTACGGCCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGTGGACTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGCGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGTGCCTGGTGGCCGTTCCTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGTTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGCATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCTGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGCTGTTGGTGGTG
TTCCCGCCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCACCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATTTCGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAG
CGCGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCATCACGGCAGCCGCAGCTCGTCGTC
CGCGGCCCTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624