Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   QMM10_RS08100 Genome accession   NZ_AP025938
Coordinates   1621105..1622376 (+) Length   423 a.a.
NCBI ID   WP_001113208.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701057     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1616105..1627376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM10_RS08065 (PC1044_15970) - 1617171..1617599 (-) 429 WP_000401988.1 NUDIX hydrolase -
  QMM10_RS08070 (PC1044_15980) - 1617601..1618668 (-) 1068 WP_000719721.1 site-2 protease family protein -
  QMM10_RS08075 (PC1044_15990) - 1618687..1619157 (-) 471 WP_050207051.1 DUF3013 family protein -
  QMM10_RS08080 (PC1044_16000) - 1619448..1619900 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  QMM10_RS08085 (PC1044_16010) - 1619937..1620116 (-) 180 WP_025169096.1 type II toxin-antitoxin system HicA family toxin -
  QMM10_RS08090 (PC1044_16020) - 1620253..1620432 (-) 180 WP_001809903.1 hypothetical protein -
  QMM10_RS08095 - 1620597..1620835 (-) 239 Protein_1608 hypothetical protein -
  QMM10_RS08100 (PC1044_16030) rarA 1621105..1622376 (+) 1272 WP_001113208.1 replication-associated recombination protein A Machinery gene
  QMM10_RS08110 (PC1044_16040) - 1622922..1624241 (-) 1320 WP_000502548.1 glycoside hydrolase family 32 protein -
  QMM10_RS08115 (PC1044_16050) - 1624251..1625867 (-) 1617 WP_050207052.1 ABC transporter substrate-binding protein -
  QMM10_RS08120 (PC1044_16060) - 1625896..1626786 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46948.37 Da        Isoelectric Point: 5.9140

>NTDB_id=79066 QMM10_RS08100 WP_001113208.1 1621105..1622376(+) (rarA) [Streptococcus pneumoniae strain PZ900701057]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKASGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=79066 QMM10_RS08100 WP_001113208.1 1621105..1622376(+) (rarA) [Streptococcus pneumoniae strain PZ900701057]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGAGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGTTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCAGAAGCCCGCATTCTCATCGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAGCATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.68

96.69

0.567

Multiple sequence alignment