Detailed information NTG0790624

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP58_RS09490
• Genome accession: NZ_CP118148
• Coordinates: 2102998..2105229 (+)
• Length: 743 a.a.
• NCBI ID: WP_028683133.1
• Uniprot ID: A0A554PPT4
• Organism: Pseudomonas chlororaphis strain NCCB 880622
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2097998..2110229

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP58_RS09465 (PUP58_09465)	-	2099119..2099778 (+)	660	WP_009047812.1	transglutaminase-like domain-containing protein	-
PUP58_RS09470 (PUP58_09470)	-	2099821..2100444 (+)	624	WP_038631107.1	glutathione S-transferase family protein	-
PUP58_RS09475 (PUP58_09475)	-	2100577..2101509 (+)	933	WP_009047814.1	ABC transporter ATP-binding protein	-
PUP58_RS09480 (PUP58_09480)	-	2101506..2102285 (+)	780	WP_007931651.1	ABC transporter permease	-
PUP58_RS09485 (PUP58_09485)	-	2102334..2102849 (-)	516	WP_009047815.1	DUF2062 domain-containing protein	-
PUP58_RS09490 (PUP58_09490)	comA	2102998..2105229 (+)	2232	WP_028683133.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP58_RS09495 (PUP58_09495)	exbB	2105332..2105967 (+)	636	WP_009047817.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP58_RS09500 (PUP58_09500)	-	2105964..2106392 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
PUP58_RS09505 (PUP58_09505)	lpxK	2106392..2107402 (+)	1011	WP_063429110.1	tetraacyldisaccharide 4'-kinase	-
PUP58_RS09510 (PUP58_09510)	-	2107426..2107611 (+)	186	WP_007931663.1	Trm112 family protein	-
PUP58_RS09515 (PUP58_09515)	kdsB	2107608..2108372 (+)	765	WP_009047820.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP58_RS09520 (PUP58_09520)	-	2108372..2108836 (+)	465	WP_041987220.1	low molecular weight protein-tyrosine-phosphatase	-
PUP58_RS09525 (PUP58_09525)	murB	2108833..2109852 (+)	1020	WP_009047822.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81285.43 Da
• Isoelectric Point: 10.1404

>NTDB_id=790624 PUP58_RS09490 WP_028683133.1 2102998..2105229(+) (comA) [Pseudomonas chlororaphis strain NCCB 880622]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWHWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDVLAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAQHGALRLVL
GTYAEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790624 PUP58_RS09490 WP_028683133.1 2102998..2105229(+) (comA) [Pseudomonas chlororaphis strain NCCB 880622]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGACGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGACTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGCCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGCCGCCACGCAGGAGAGCTGGCGTGCGCGCATTCGCCAACGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAGGATTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCTGCCGTAATGTATGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGGGCCTGGTGGCCGTTCCTGCTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCCCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGTCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGTCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGGACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGTGGTTTGCTGGATTTATTGTT
CCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCGTGGATAGCACCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGGGCCTTTCTGCTGTTGTTGCCCGCGGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGCTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGGCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGTGATTCCGACCTGGGCGCCCGGGTGGTACTGC
CATCGTTGCGCAAGCTGGGCATCGCGCGCCTCGACCTGATGCTGCTCAGTCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCACTGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAATGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGACGTCCTGGCGGAA
CGAGCATTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGTTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGCAGCACGGAGCGCTGCGGTTGGTGCTG
GGCACATACGCCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

3D structure

• AlphaFold DB: A0A554PPT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624