Detailed information NTG0790609

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP56_RS26785
• Genome accession: NZ_CP118147
• Coordinates: 5944153..5945481 (+)
• Length: 442 a.a.
• NCBI ID: WP_114761485.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 174151
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5939153..5950481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP56_RS26765 (PUP56_26765)	pgeF	5940644..5941369 (-)	726	WP_114761484.1	peptidoglycan editing factor PgeF	-
PUP56_RS26770 (PUP56_26770)	rluD	5941366..5942328 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP56_RS26775 (PUP56_26775)	-	5942480..5943502 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
PUP56_RS26780 (PUP56_26780)	-	5943636..5943869 (+)	234	WP_062824555.1	PP0621 family protein	-
PUP56_RS26785 (PUP56_26785)	pilR	5944153..5945481 (+)	1329	WP_114761485.1	sigma-54-dependent transcriptional regulator	Regulator
PUP56_RS26790 (PUP56_26790)	thiO	5945478..5946578 (-)	1101	WP_114761486.1	glycine oxidase ThiO	-
PUP56_RS26795 (PUP56_26795)	-	5946633..5947034 (-)	402	WP_007924724.1	type IV pilin protein	-
PUP56_RS26800 (PUP56_26800)	-	5947048..5950119 (-)	3072	WP_114761487.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48861.43 Da
• Isoelectric Point: 9.0627

>NTDB_id=790609 PUP56_RS26785 WP_114761485.1 5944153..5945481(+) (pilR) [Pseudomonas chlororaphis strain ATCC 174151]
MSPRQKVLIVDDDPGIREYLEISLDRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAIHALKAGAIDFLSKPVALARLRELLNGALPGSIPPNPATGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHEQGPRACHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELPVPALRARKADIEPLATAILE
RLAQGNGQQLARLQPSALQALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGPAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790609 PUP56_RS26785 WP_114761485.1 5944153..5945481(+) (pilR) [Pseudomonas chlororaphis strain ATCC 174151]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGACGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGACCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCGCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGATCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCACGCTTGCGCGAGCTGCTGAATGGCGCCCTGCCCGGATCGATACCACCGAACCCTGCTACCGGTCCATTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGTGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGAGCAGGGTCCTCGAGCCTGCCACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTACGTTGCGTCGGCGGGCAACAGGAGGTCCAGGTCGATGT
ACGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCAAGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACGCCAAACGGCGCCCACCCGGCCATCACGCCCGGACCGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAACACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCTATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.72	100	0.679
pilR	Acinetobacter baumannii strain A118	43.601	100	0.455