Detailed information NTG0790599

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP56_RS09940
• Genome accession: NZ_CP118147
• Coordinates: 2185898..2188129 (+)
• Length: 743 a.a.
• NCBI ID: WP_114759697.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 174151
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2180898..2193129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP56_RS09915 (PUP56_09915)	-	2182019..2182678 (+)	660	WP_092418112.1	transglutaminase-like domain-containing protein	-
PUP56_RS09920 (PUP56_09920)	-	2182721..2183344 (+)	624	WP_009042835.1	glutathione S-transferase family protein	-
PUP56_RS09925 (PUP56_09925)	-	2183477..2184409 (+)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
PUP56_RS09930 (PUP56_09930)	-	2184406..2185185 (+)	780	WP_007931651.1	ABC transporter permease	-
PUP56_RS09935 (PUP56_09935)	-	2185234..2185749 (-)	516	WP_007931653.1	DUF2062 domain-containing protein	-
PUP56_RS09940 (PUP56_09940)	comA	2185898..2188129 (+)	2232	WP_114759697.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP56_RS09945 (PUP56_09945)	exbB	2188232..2188867 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP56_RS09950 (PUP56_09950)	-	2188864..2189292 (+)	429	WP_007931660.1	ExbD/TolR family protein	-
PUP56_RS09955 (PUP56_09955)	lpxK	2189292..2190302 (+)	1011	WP_092418114.1	tetraacyldisaccharide 4'-kinase	-
PUP56_RS09960 (PUP56_09960)	-	2190325..2190510 (+)	186	WP_007931663.1	Trm112 family protein	-
PUP56_RS09965 (PUP56_09965)	kdsB	2190507..2191271 (+)	765	WP_009042838.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP56_RS09970 (PUP56_09970)	-	2191271..2191735 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
PUP56_RS09975 (PUP56_09975)	murB	2191732..2192751 (+)	1020	WP_114759696.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 80980.01 Da
• Isoelectric Point: 10.2100

>NTDB_id=790599 PUP56_RS09940 WP_114759697.1 2185898..2188129(+) (comA) [Pseudomonas chlororaphis strain ATCC 174151]
MRTGMLAFAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAAPLDGQTRWLEG
RVVGLPQQAEGLVRFELEDGRARRGRIPQRLRLAWHGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRRPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWIAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790599 PUP56_RS09940 WP_114759697.1 2185898..2188129(+) (comA) [Pseudomonas chlororaphis strain ATCC 174151]
ATGCGCACAGGGATGCTGGCGTTTGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGTT
GGCAGTGCTGCCGGTAGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGCACCACTCGACGGGCAGACTCGCTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGGCCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGGCGAAT
CCCGCAACGCCTGCGCCTGGCCTGGCATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGT
ACGGTCAAGGATGGGCAATTGCTGGCCGCCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCACGGGCGCGCCGGCGGCCTGGCGGCCCTGGTGCTGGGCGACGGTTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCAGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGTTACGGCCTGTGGCCCGGACGCAGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGCGCCTGGTGGCCGTTCTTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGCTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGTTGTTGGTGGTG
TTCCCACCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTAGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCCAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAA
CGCGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGTTCGTCGTC
CGCGGCCCTGCTCAAGGCTCTTGCGCCTTCGGCGGTGCTGATCTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGTACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624