Detailed information NTG0790548

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP75_RS09805
• Genome accession: NZ_CP118145
• Coordinates: 2161514..2163745 (+)
• Length: 743 a.a.
• NCBI ID: WP_274336068.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17417
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2156514..2168745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP75_RS09780 (PUP75_09780)	-	2157635..2158294 (+)	660	WP_274336067.1	transglutaminase-like domain-containing protein	-
PUP75_RS09785 (PUP75_09785)	-	2158337..2158960 (+)	624	WP_009042835.1	glutathione S-transferase family protein	-
PUP75_RS09790 (PUP75_09790)	-	2159093..2160025 (+)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
PUP75_RS09795 (PUP75_09795)	-	2160022..2160801 (+)	780	WP_007931651.1	ABC transporter permease	-
PUP75_RS09800 (PUP75_09800)	-	2160850..2161365 (-)	516	WP_007931653.1	DUF2062 domain-containing protein	-
PUP75_RS09805 (PUP75_09805)	comA	2161514..2163745 (+)	2232	WP_274336068.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP75_RS09810 (PUP75_09810)	exbB	2163848..2164483 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP75_RS09815 (PUP75_09815)	-	2164480..2164908 (+)	429	WP_007931660.1	ExbD/TolR family protein	-
PUP75_RS09820 (PUP75_09820)	lpxK	2164908..2165918 (+)	1011	WP_274336070.1	tetraacyldisaccharide 4'-kinase	-
PUP75_RS09825 (PUP75_09825)	-	2165941..2166126 (+)	186	WP_007931663.1	Trm112 family protein	-
PUP75_RS09830 (PUP75_09830)	kdsB	2166123..2166887 (+)	765	WP_274336071.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP75_RS09835 (PUP75_09835)	-	2166887..2167351 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
PUP75_RS09840 (PUP75_09840)	murB	2167348..2168367 (+)	1020	WP_274336072.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81046.07 Da
• Isoelectric Point: 9.9596

>NTDB_id=790548 PUP75_RS09805 WP_274336068.1 2161514..2163745(+) (comA) [Pseudomonas chlororaphis strain ATCC 17417]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790548 PUP75_RS09805 WP_274336068.1 2161514..2163745(+) (comA) [Pseudomonas chlororaphis strain ATCC 17417]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGTT
GGCAGTGCTGCCGGTAGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGAACCACTCGACGGGCAGACTCGCTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGGCCGAGGGTCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGACGGAT
TCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGT
ACGGTCAAGGATGGGCAATTGCTGGCCGCCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCACGGGCGCGCCGGCGGCCTGGCGGCCCTGGTACTGGGCGACGGCTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCAGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGCGCCTGGTGGCCGTTCTTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCTTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGTCGCCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCTCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGCTTGCTGGACCTGCTGTT
TCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCCTGGGTAGCTCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGTTGTTGGTGGTG
TTCCCACCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCGCCTCGATCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGTGCC
GACGCCATCCAGCGCGGCCTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCCAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAA
CGCGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGCTCGTCGTC
CGCGGCCCTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGTGGGCACGGCAACGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGCACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.673	96.77	0.626