Detailed information NTG0790522

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP51_RS09820
• Genome accession: NZ_CP118144
• Coordinates: 2168727..2170958 (+)
• Length: 743 a.a.
• NCBI ID: WP_274332431.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 174181
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2163727..2175958

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP51_RS09795 (PUP51_09795)	-	2164848..2165507 (+)	660	WP_274332429.1	transglutaminase-like domain-containing protein	-
PUP51_RS09800 (PUP51_09800)	-	2165550..2166173 (+)	624	WP_009042835.1	glutathione S-transferase family protein	-
PUP51_RS09805 (PUP51_09805)	-	2166306..2167238 (+)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
PUP51_RS09810 (PUP51_09810)	-	2167235..2168014 (+)	780	WP_007931651.1	ABC transporter permease	-
PUP51_RS09815 (PUP51_09815)	-	2168063..2168578 (-)	516	WP_007931653.1	DUF2062 domain-containing protein	-
PUP51_RS09820 (PUP51_09820)	comA	2168727..2170958 (+)	2232	WP_274332431.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP51_RS09825 (PUP51_09825)	exbB	2171061..2171696 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP51_RS09830 (PUP51_09830)	-	2171693..2172121 (+)	429	WP_007931660.1	ExbD/TolR family protein	-
PUP51_RS09835 (PUP51_09835)	lpxK	2172121..2173131 (+)	1011	WP_009042837.1	tetraacyldisaccharide 4'-kinase	-
PUP51_RS09840 (PUP51_09840)	-	2173154..2173339 (+)	186	WP_007931663.1	Trm112 family protein	-
PUP51_RS09845 (PUP51_09845)	kdsB	2173336..2174100 (+)	765	WP_009042838.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP51_RS09850 (PUP51_09850)	-	2174100..2174564 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
PUP51_RS09855 (PUP51_09855)	murB	2174561..2175580 (+)	1020	WP_009042839.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81074.10 Da
• Isoelectric Point: 10.0055

>NTDB_id=790522 PUP51_RS09820 WP_274332431.1 2168727..2170958(+) (comA) [Pseudomonas chlororaphis strain ATCC 174181]
MRTGMLAFAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLMRFELEDGRARRGRIPQRLRLAWHGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWIAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTALAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790522 PUP51_RS09820 WP_274332431.1 2168727..2170958(+) (comA) [Pseudomonas chlororaphis strain ATCC 174181]
ATGCGCACAGGGATGCTGGCGTTTGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTAGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGAACCACTCGACGGGCAGACTCGCTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGGCCGAGGGGCTGATGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGGCGAAT
CCCGCAACGTCTGCGCCTGGCCTGGCATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAATTGCTGGCCGCCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCACGGGCGCGCCGGCGGCCTGGCGGCCCTGGTACTGGGCGACGGCTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCAGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGCGCCTGGTGGCCGTTCCTGCTGGCATTGAATGCGGTGTTGTTGTTTGAGCCGCTG
GCCAGTCTGCAGCCGGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTATTGATCCTGATCTTTGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCTGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGCTGTTGGTGGTG
TTCCCGCCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGTGTCGTGCTGC
CGTCCTTGCGTAAGCTGGGCGTCGCGCGCCTCGACCTGATGCTGCTCAGTCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCCAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAA
CGCGCCTTGCTGGATACCGCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGCTCGTCGTC
CGCGGCCCTGCTCAAGGCTCTTGCGCCTTCGGCGGTGCTGATCTCCCGTGGGCACGGCAACGGGTTTGGGCATCCGCACC
CACAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGCACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.395	96.77	0.623