Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | PotMrB4_RS01920 | Genome accession | NZ_AP022642 |
| Coordinates | 383253..384398 (+) | Length | 381 a.a. |
| NCBI ID | WP_044403589.1 | Uniprot ID | A0AB36F620 |
| Organism | Metapseudomonas otitidis strain MrB4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 378253..389398
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PotMrB4_RS01890 (PtoMrB4_03760) | - | 378342..378638 (-) | 297 | WP_172432360.1 | DUF167 domain-containing protein | - |
| PotMrB4_RS01895 (PtoMrB4_03770) | - | 378638..379231 (-) | 594 | WP_074967194.1 | YggT family protein | - |
| PotMrB4_RS01900 (PtoMrB4_03780) | - | 379323..380510 (-) | 1188 | WP_172432361.1 | hypothetical protein | - |
| PotMrB4_RS01905 (PtoMrB4_03790) | proC | 380513..381331 (-) | 819 | WP_172432362.1 | pyrroline-5-carboxylate reductase | - |
| PotMrB4_RS01910 (PtoMrB4_03800) | - | 381349..382041 (-) | 693 | WP_160480527.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| PotMrB4_RS01915 (PtoMrB4_03810) | pilT | 382110..383144 (+) | 1035 | WP_044403590.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| PotMrB4_RS01920 (PtoMrB4_03820) | pilU | 383253..384398 (+) | 1146 | WP_044403589.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| PotMrB4_RS01925 (PtoMrB4_03830) | - | 384340..385785 (-) | 1446 | WP_172432363.1 | TIGR03915 family putative DNA repair protein | - |
| PotMrB4_RS01930 (PtoMrB4_03840) | - | 385785..386996 (-) | 1212 | WP_069566424.1 | putative DNA modification/repair radical SAM protein | - |
| PotMrB4_RS01935 (PtoMrB4_03850) | - | 387103..387498 (+) | 396 | WP_142012809.1 | TM2 domain-containing protein | - |
| PotMrB4_RS01940 (PtoMrB4_03860) | - | 387556..388827 (-) | 1272 | WP_172432364.1 | dihydroorotase | - |
Sequence
Protein
Download Length: 381 a.a. Molecular weight: 42485.80 Da Isoelectric Point: 6.7727
>NTDB_id=79052 PotMrB4_RS01920 WP_044403589.1 383253..384398(+) (pilU) [Metapseudomonas otitidis strain MrB4]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKVMPVTKNPMSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLEQLKLPEVLKKLAMTKRGLVLFVGATGTGKSTSLAAMIGYRNKNSSGHIISIED
PIEYIHQHQGCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEVRTRETMDHAVAFAETGHLCLATLHANNANQALDRI
INFFPADRQQQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLVADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYNLYSQGEITYEDALLYADSANDLRLMIKLGSETDGEHLTSISGGLSLEVSEDDPGRRFR
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKVMPVTKNPMSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLEQLKLPEVLKKLAMTKRGLVLFVGATGTGKSTSLAAMIGYRNKNSSGHIISIED
PIEYIHQHQGCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEVRTRETMDHAVAFAETGHLCLATLHANNANQALDRI
INFFPADRQQQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLVADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYNLYSQGEITYEDALLYADSANDLRLMIKLGSETDGEHLTSISGGLSLEVSEDDPGRRFR
Nucleotide
Download Length: 1146 bp
>NTDB_id=79052 PotMrB4_RS01920 WP_044403589.1 383253..384398(+) (pilU) [Metapseudomonas otitidis strain MrB4]
ATGGAATTCGAGAAACTGTTGCGCCTGATGGTCGAGAAGGGCGGTTCGGACCTGTTCATCACGGCCGGTGTGCCGCCGTC
GATGAAGGTCAACGGCAAGGTCATGCCGGTCACCAAGAACCCCATGTCGCCGGAGCAGACCCGGGAAACCGTGCTGGGGG
TGATGAACGAGCAGCAGCGCCGCGACTTCGCCGAGAACCACGAGTGCAACTTCGCCATCAGCGCCCGGGGCATCGGCCGT
TTCCGCGTCAGCGCCTTCTACCAGCGCAACCTGGTGGGCATGGTGCTGCGCCGCATCGAGACCAACATTCCCACCCTGGA
GCAGCTCAAGCTGCCCGAGGTGCTGAAGAAGCTGGCCATGACCAAGCGCGGCCTGGTGCTCTTCGTCGGTGCCACCGGCA
CCGGCAAGTCCACGTCCCTGGCGGCGATGATCGGCTACCGCAACAAGAACAGCTCCGGCCACATCATCTCCATCGAAGAC
CCCATCGAATACATCCACCAGCACCAGGGTTGCATCGTCACCCAGCGTGAAGTGGGGATCGACACCGAGTCCTTCGAAGT
GGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTCATCGGTGAGGTGCGGACCCGCGAGACCATGGACCACG
CCGTGGCCTTCGCCGAAACAGGCCACCTGTGCCTGGCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATCAACTTCTTCCCTGCCGACCGTCAGCAGCAGGTGTGGATGGACCTGTCCCTCAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCGGATGGCAAGGGGCGCCGCGCGGTGATCGAGGTGCTGATCAATACCCCGCTGGTGGCCGACCTGA
TCCGCAAGGGCGAGGTCCACGAGCTCAAGCCGCTGATGAAACGCTCCACCGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACAACCTCTACTCCCAGGGCGAGATCACCTACGAAGACGCCCTGCTCTACGCCGACTCGGCGAACGACCTGCGCCT
GATGATCAAGCTCGGTTCCGAGACCGACGGCGAACACCTGACCAGCATCAGTGGCGGGCTGTCCCTGGAAGTCTCGGAAG
ACGATCCGGGCCGTCGCTTCCGCTGA
ATGGAATTCGAGAAACTGTTGCGCCTGATGGTCGAGAAGGGCGGTTCGGACCTGTTCATCACGGCCGGTGTGCCGCCGTC
GATGAAGGTCAACGGCAAGGTCATGCCGGTCACCAAGAACCCCATGTCGCCGGAGCAGACCCGGGAAACCGTGCTGGGGG
TGATGAACGAGCAGCAGCGCCGCGACTTCGCCGAGAACCACGAGTGCAACTTCGCCATCAGCGCCCGGGGCATCGGCCGT
TTCCGCGTCAGCGCCTTCTACCAGCGCAACCTGGTGGGCATGGTGCTGCGCCGCATCGAGACCAACATTCCCACCCTGGA
GCAGCTCAAGCTGCCCGAGGTGCTGAAGAAGCTGGCCATGACCAAGCGCGGCCTGGTGCTCTTCGTCGGTGCCACCGGCA
CCGGCAAGTCCACGTCCCTGGCGGCGATGATCGGCTACCGCAACAAGAACAGCTCCGGCCACATCATCTCCATCGAAGAC
CCCATCGAATACATCCACCAGCACCAGGGTTGCATCGTCACCCAGCGTGAAGTGGGGATCGACACCGAGTCCTTCGAAGT
GGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTCATCGGTGAGGTGCGGACCCGCGAGACCATGGACCACG
CCGTGGCCTTCGCCGAAACAGGCCACCTGTGCCTGGCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATCAACTTCTTCCCTGCCGACCGTCAGCAGCAGGTGTGGATGGACCTGTCCCTCAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCGGATGGCAAGGGGCGCCGCGCGGTGATCGAGGTGCTGATCAATACCCCGCTGGTGGCCGACCTGA
TCCGCAAGGGCGAGGTCCACGAGCTCAAGCCGCTGATGAAACGCTCCACCGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACAACCTCTACTCCCAGGGCGAGATCACCTACGAAGACGCCCTGCTCTACGCCGACTCGGCGAACGACCTGCGCCT
GATGATCAAGCTCGGTTCCGAGACCGACGGCGAACACCTGACCAGCATCAGTGGCGGGCTGTCCCTGGAAGTCTCGGAAG
ACGATCCGGGCCGTCGCTTCCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
92.126 |
100 |
0.921 |
| pilU | Acinetobacter baylyi ADP1 |
63.866 |
93.701 |
0.598 |
| pilU | Vibrio cholerae strain A1552 |
58.857 |
91.864 |
0.541 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.75 |
88.189 |
0.386 |