Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PUP62_RS09820 Genome accession   NZ_CP118143
Coordinates   2171044..2171679 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain ATCC 174182     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2166044..2176679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP62_RS09800 (PUP62_09800) - 2166289..2167221 (+) 933 WP_007931649.1 ABC transporter ATP-binding protein -
  PUP62_RS09805 (PUP62_09805) - 2167218..2167997 (+) 780 WP_007931651.1 ABC transporter permease -
  PUP62_RS09810 (PUP62_09810) - 2168046..2168561 (-) 516 WP_007931653.1 DUF2062 domain-containing protein -
  PUP62_RS09815 (PUP62_09815) comA 2168710..2170941 (+) 2232 WP_274332431.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP62_RS09820 (PUP62_09820) exbB 2171044..2171679 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP62_RS09825 (PUP62_09825) - 2171676..2172104 (+) 429 WP_007931660.1 ExbD/TolR family protein -
  PUP62_RS09830 (PUP62_09830) lpxK 2172104..2173114 (+) 1011 WP_009042837.1 tetraacyldisaccharide 4'-kinase -
  PUP62_RS09835 (PUP62_09835) - 2173137..2173322 (+) 186 WP_007931663.1 Trm112 family protein -
  PUP62_RS09840 (PUP62_09840) kdsB 2173319..2174083 (+) 765 WP_009042838.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP62_RS09845 (PUP62_09845) - 2174083..2174547 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  PUP62_RS09850 (PUP62_09850) murB 2174544..2175563 (+) 1020 WP_009042839.1 UDP-N-acetylmuramate dehydrogenase -
  PUP62_RS09855 (PUP62_09855) - 2175812..2176282 (+) 471 WP_123573896.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=790497 PUP62_RS09820 WP_007931657.1 2171044..2171679(+) (exbB) [Pseudomonas chlororaphis strain ATCC 174182]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=790497 PUP62_RS09820 WP_007931657.1 2171044..2171679(+) (exbB) [Pseudomonas chlororaphis strain ATCC 174182]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTCACCCCGCCTCATCTGCTGGGCCAAGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCGCCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCTCGGGCATGACTAGCAACGCCGCGGTGCTGGCCGGCGGTATCTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAACTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867